Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01970

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01969 and CCNA_01970 are separated by 121 nucleotidesCCNA_01970 and CCNA_01971 are separated by 139 nucleotides CCNA_01969: CCNA_01969 - aspartyl-tRNA synthetase, at 2,112,556 to 2,114,394 _01969 CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277 _01970 CCNA_01971: CCNA_01971 - peptidyl-prolyl cis-trans isomerase, at 2,115,417 to 2,117,381 _01971 Position (kb) 2114 2115 2116Strain fitness (log2 ratio) -2 -1 0 1at 2114.423 kb on - strandat 2114.475 kb on - strandat 2114.492 kb on - strandat 2114.521 kb on - strandat 2115.285 kb on + strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.332 kb on - strandat 2115.349 kb on + strandat 2115.357 kb on - strandat 2115.361 kb on + strandat 2115.396 kb on + strandat 2115.396 kb on + strandat 2115.515 kb on + strandat 2115.562 kb on + strandat 2115.562 kb on + strandat 2115.654 kb on + strand, within CCNA_01971at 2115.720 kb on + strand, within CCNA_01971at 2116.010 kb on + strand, within CCNA_01971at 2116.203 kb on + strand, within CCNA_01971at 2116.229 kb on + strand, within CCNA_01971at 2116.229 kb on + strand, within CCNA_01971

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,114,423 - -0.3
2,114,475 - +1.3
2,114,492 - +1.7
2,114,521 - -0.3
2,115,285 + -1.5
2,115,309 - +0.6
2,115,309 - +0.5
2,115,309 - -0.9
2,115,332 - -1.8
2,115,349 + +1.0
2,115,357 - -1.8
2,115,361 + -0.1
2,115,396 + +1.0
2,115,396 + +0.4
2,115,515 + +0.7
2,115,562 + -0.4
2,115,562 + +0.7
2,115,654 + CCNA_01971 0.12 -0.1
2,115,720 + CCNA_01971 0.15 +0.2
2,116,010 + CCNA_01971 0.30 -1.0
2,116,203 + CCNA_01971 0.40 +0.7
2,116,229 + CCNA_01971 0.41 -0.8
2,116,229 + CCNA_01971 0.41 -0.3

Or see this region's nucleotide sequence