Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01918 and CCNA_01919 are separated by 81 nucleotides CCNA_01919 and CCNA_01920 are separated by 120 nucleotides
CCNA_01918: CCNA_01918 - cyclic di-GMP effector protein PopA, at 2,061,343 to 2,062,668
_01918
CCNA_01919: CCNA_01919 - FrnE protein, at 2,062,750 to 2,063,394
_01919
CCNA_01920: CCNA_01920 - transcription-repair coupling factor Mfd, at 2,063,515 to 2,066,982
_01920
Position (kb)
2062
2063
2064 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2061.825 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.845 kb on - strand, within CCNA_01918 at 2061.860 kb on + strand, within CCNA_01918 at 2061.868 kb on - strand, within CCNA_01918 at 2061.895 kb on + strand, within CCNA_01918 at 2061.934 kb on + strand, within CCNA_01918 at 2062.023 kb on + strand, within CCNA_01918 at 2062.023 kb on + strand, within CCNA_01918 at 2062.031 kb on - strand, within CCNA_01918 at 2062.031 kb on - strand, within CCNA_01918 at 2062.044 kb on - strand, within CCNA_01918 at 2062.064 kb on - strand, within CCNA_01918 at 2062.068 kb on - strand, within CCNA_01918 at 2062.196 kb on + strand, within CCNA_01918 at 2062.196 kb on + strand, within CCNA_01918 at 2062.209 kb on - strand, within CCNA_01918 at 2062.329 kb on + strand, within CCNA_01918 at 2062.466 kb on - strand, within CCNA_01918 at 2062.476 kb on + strand, within CCNA_01918 at 2062.477 kb on - strand, within CCNA_01918 at 2062.543 kb on + strand at 2062.596 kb on - strand at 2062.671 kb on - strand at 2062.711 kb on - strand at 2062.711 kb on - strand at 2062.913 kb on - strand, within CCNA_01919 at 2062.930 kb on + strand, within CCNA_01919 at 2062.947 kb on - strand, within CCNA_01919 at 2062.965 kb on + strand, within CCNA_01919 at 2062.971 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.989 kb on + strand, within CCNA_01919 at 2062.989 kb on + strand, within CCNA_01919 at 2062.997 kb on - strand, within CCNA_01919 at 2063.017 kb on + strand, within CCNA_01919 at 2063.052 kb on + strand, within CCNA_01919 at 2063.052 kb on + strand, within CCNA_01919 at 2063.060 kb on - strand, within CCNA_01919 at 2063.068 kb on + strand, within CCNA_01919 at 2063.086 kb on - strand, within CCNA_01919 at 2063.103 kb on + strand, within CCNA_01919 at 2063.117 kb on - strand, within CCNA_01919 at 2063.138 kb on - strand, within CCNA_01919 at 2063.154 kb on - strand, within CCNA_01919 at 2063.154 kb on - strand, within CCNA_01919 at 2063.199 kb on + strand, within CCNA_01919 at 2063.237 kb on - strand, within CCNA_01919 at 2063.237 kb on - strand, within CCNA_01919 at 2063.268 kb on + strand, within CCNA_01919 at 2063.278 kb on + strand, within CCNA_01919 at 2063.278 kb on + strand, within CCNA_01919 at 2063.382 kb on - strand at 2063.418 kb on - strand at 2063.468 kb on - strand at 2063.506 kb on + strand at 2063.514 kb on - strand at 2063.559 kb on - strand at 2063.616 kb on - strand at 2063.616 kb on - strand at 2063.662 kb on - strand at 2063.681 kb on - strand at 2063.691 kb on + strand at 2063.747 kb on - strand at 2063.782 kb on - strand at 2063.833 kb on + strand at 2063.841 kb on - strand at 2063.841 kb on - strand at 2063.864 kb on + strand, within CCNA_01920 at 2063.864 kb on + strand, within CCNA_01920 at 2063.872 kb on - strand, within CCNA_01920 at 2063.872 kb on - strand, within CCNA_01920 at 2064.050 kb on + strand, within CCNA_01920 at 2064.093 kb on - strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.119 kb on - strand, within CCNA_01920 at 2064.127 kb on + strand, within CCNA_01920 at 2064.132 kb on + strand, within CCNA_01920 at 2064.132 kb on + strand, within CCNA_01920 at 2064.140 kb on - strand, within CCNA_01920 at 2064.205 kb on + strand, within CCNA_01920 at 2064.205 kb on - strand, within CCNA_01920 at 2064.272 kb on + strand, within CCNA_01920 at 2064.278 kb on + strand, within CCNA_01920 at 2064.320 kb on + strand, within CCNA_01920 at 2064.337 kb on + strand, within CCNA_01920 at 2064.388 kb on - strand, within CCNA_01920
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,061,825 + CCNA_01918 0.36 +0.5 2,061,837 + CCNA_01918 0.37 -0.5 2,061,837 + CCNA_01918 0.37 +0.7 2,061,837 + CCNA_01918 0.37 +0.6 2,061,845 - CCNA_01918 0.38 +0.6 2,061,860 + CCNA_01918 0.39 +0.5 2,061,868 - CCNA_01918 0.40 -3.0 2,061,895 + CCNA_01918 0.42 +0.0 2,061,934 + CCNA_01918 0.45 -0.8 2,062,023 + CCNA_01918 0.51 +0.3 2,062,023 + CCNA_01918 0.51 +1.0 2,062,031 - CCNA_01918 0.52 -1.7 2,062,031 - CCNA_01918 0.52 -1.0 2,062,044 - CCNA_01918 0.53 -1.0 2,062,064 - CCNA_01918 0.54 -0.4 2,062,068 - CCNA_01918 0.55 +1.2 2,062,196 + CCNA_01918 0.64 +0.3 2,062,196 + CCNA_01918 0.64 -3.0 2,062,209 - CCNA_01918 0.65 +0.5 2,062,329 + CCNA_01918 0.74 +0.1 2,062,466 - CCNA_01918 0.85 -1.1 2,062,476 + CCNA_01918 0.85 +0.6 2,062,477 - CCNA_01918 0.86 +0.3 2,062,543 + -0.6 2,062,596 - +0.2 2,062,671 - +0.6 2,062,711 - +1.0 2,062,711 - -0.4 2,062,913 - CCNA_01919 0.25 +0.2 2,062,930 + CCNA_01919 0.28 +0.2 2,062,947 - CCNA_01919 0.31 -0.3 2,062,965 + CCNA_01919 0.33 -0.3 2,062,971 - CCNA_01919 0.34 -0.4 2,062,973 - CCNA_01919 0.35 +0.2 2,062,973 - CCNA_01919 0.35 +0.1 2,062,973 - CCNA_01919 0.35 +1.5 2,062,989 + CCNA_01919 0.37 +0.7 2,062,989 + CCNA_01919 0.37 +1.6 2,062,997 - CCNA_01919 0.38 -1.1 2,063,017 + CCNA_01919 0.41 -0.2 2,063,052 + CCNA_01919 0.47 -0.4 2,063,052 + CCNA_01919 0.47 -0.9 2,063,060 - CCNA_01919 0.48 +0.1 2,063,068 + CCNA_01919 0.49 +1.2 2,063,086 - CCNA_01919 0.52 -0.2 2,063,103 + CCNA_01919 0.55 +0.1 2,063,117 - CCNA_01919 0.57 -0.3 2,063,138 - CCNA_01919 0.60 -2.5 2,063,154 - CCNA_01919 0.63 +0.5 2,063,154 - CCNA_01919 0.63 +1.5 2,063,199 + CCNA_01919 0.70 +0.8 2,063,237 - CCNA_01919 0.76 +0.4 2,063,237 - CCNA_01919 0.76 -1.9 2,063,268 + CCNA_01919 0.80 +0.5 2,063,278 + CCNA_01919 0.82 -0.3 2,063,278 + CCNA_01919 0.82 +0.0 2,063,382 - -0.4 2,063,418 - +0.4 2,063,468 - +0.5 2,063,506 + -0.3 2,063,514 - -2.5 2,063,559 - +0.2 2,063,616 - -1.9 2,063,616 - +1.4 2,063,662 - -0.3 2,063,681 - -1.1 2,063,691 + -0.2 2,063,747 - +0.5 2,063,782 - +0.2 2,063,833 + -0.1 2,063,841 - -1.2 2,063,841 - -0.7 2,063,864 + CCNA_01920 0.10 +1.3 2,063,864 + CCNA_01920 0.10 -2.3 2,063,872 - CCNA_01920 0.10 -0.2 2,063,872 - CCNA_01920 0.10 +0.1 2,064,050 + CCNA_01920 0.15 -0.5 2,064,093 - CCNA_01920 0.17 +1.6 2,064,111 + CCNA_01920 0.17 -1.2 2,064,111 + CCNA_01920 0.17 -0.7 2,064,111 + CCNA_01920 0.17 -0.6 2,064,111 + CCNA_01920 0.17 +1.6 2,064,111 + CCNA_01920 0.17 +0.5 2,064,111 + CCNA_01920 0.17 -0.9 2,064,119 - CCNA_01920 0.17 +1.4 2,064,127 + CCNA_01920 0.18 -0.6 2,064,132 + CCNA_01920 0.18 -0.8 2,064,132 + CCNA_01920 0.18 +0.7 2,064,140 - CCNA_01920 0.18 +0.2 2,064,205 + CCNA_01920 0.20 +0.6 2,064,205 - CCNA_01920 0.20 -0.2 2,064,272 + CCNA_01920 0.22 -1.3 2,064,278 + CCNA_01920 0.22 -0.2 2,064,320 + CCNA_01920 0.23 +0.0 2,064,337 + CCNA_01920 0.24 -0.7 2,064,388 - CCNA_01920 0.25 -0.0
Or see this region's nucleotide sequence