Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01690
Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with CHIR-090 10 ug/mL |
---|---|---|---|---|---|
remove | |||||
1,817,389 | - | -0.1 | |||
1,817,429 | + | +0.1 | |||
1,817,481 | + | CCNA_01690 | 0.16 | +1.4 | |
1,817,699 | - | CCNA_01690 | 0.71 | +0.1 | |
1,817,757 | + | CCNA_01690 | 0.85 | +0.2 | |
1,817,791 | - | +1.1 | |||
1,817,801 | - | +0.7 | |||
1,817,826 | + | +1.0 | |||
1,817,869 | - | -0.3 | |||
1,817,961 | + | CCNA_01691 | 0.12 | -0.6 | |
1,818,013 | - | CCNA_01691 | 0.16 | -2.1 | |
1,818,163 | - | CCNA_01691 | 0.27 | +0.7 | |
1,818,199 | + | CCNA_01691 | 0.30 | -0.4 | |
1,818,260 | + | CCNA_01691 | 0.35 | -0.3 | |
1,818,264 | - | CCNA_01691 | 0.35 | -1.4 | |
1,818,287 | + | CCNA_01691 | 0.37 | -0.4 | |
1,818,310 | - | CCNA_01691 | 0.39 | -0.9 | |
1,818,327 | - | CCNA_01691 | 0.40 | -2.6 | |
1,818,426 | + | CCNA_01691 | 0.48 | +1.3 | |
1,818,437 | + | CCNA_01691 | 0.49 | +1.8 | |
1,818,448 | + | CCNA_01691 | 0.50 | +0.3 | |
1,818,514 | - | CCNA_01691 | 0.55 | +0.1 | |
1,818,550 | + | CCNA_01691 | 0.58 | -0.1 | |
1,818,620 | + | CCNA_01691 | 0.63 | +0.6 | |
1,818,693 | + | CCNA_01691 | 0.69 | +1.1 | |
1,818,693 | + | CCNA_01691 | 0.69 | -2.2 | |
1,818,693 | + | CCNA_01691 | 0.69 | +0.2 | |
1,818,701 | - | CCNA_01691 | 0.69 | +1.0 | |
1,818,702 | + | CCNA_01691 | 0.69 | +0.9 | |
1,818,740 | + | CCNA_01691 | 0.72 | -1.8 |
Or see this region's nucleotide sequence