Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01591

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01590 and CCNA_01591 overlap by 25 nucleotidesCCNA_01591 and CCNA_01592 are separated by 115 nucleotidesCCNA_01592 and CCNA_01593 are separated by 138 nucleotides CCNA_01590: CCNA_01590 - NAD-dependent DNA ligase, at 1,709,381 to 1,711,732 _01590 CCNA_01591: CCNA_01591 - DNA polymerase III epsilon-like protein, at 1,711,708 to 1,712,337 _01591 CCNA_01592: CCNA_01592 - SN-glycerol-3-phosphate transport ATP-binding protein, at 1,712,453 to 1,712,881 _01592 CCNA_01593: CCNA_01593 - Xaa-pro aminopeptidase, at 1,713,020 to 1,714,831 _01593 Position (kb) 1711 1712 1713Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1711.760 kb on + strandat 1711.768 kb on - strandat 1711.781 kb on - strand, within CCNA_01591at 1711.844 kb on - strand, within CCNA_01591at 1711.870 kb on + strand, within CCNA_01591at 1711.884 kb on + strand, within CCNA_01591at 1711.890 kb on - strand, within CCNA_01591at 1711.936 kb on - strand, within CCNA_01591at 1711.996 kb on + strand, within CCNA_01591at 1712.033 kb on + strand, within CCNA_01591at 1712.039 kb on - strand, within CCNA_01591at 1712.062 kb on - strand, within CCNA_01591at 1712.165 kb on - strand, within CCNA_01591at 1712.304 kb on - strandat 1712.339 kb on - strandat 1712.399 kb on - strandat 1712.422 kb on - strandat 1712.539 kb on + strand, within CCNA_01592at 1712.548 kb on - strand, within CCNA_01592at 1712.562 kb on - strand, within CCNA_01592at 1712.611 kb on + strand, within CCNA_01592at 1712.682 kb on + strand, within CCNA_01592at 1712.800 kb on + strand, within CCNA_01592at 1712.959 kb on + strandat 1712.967 kb on - strandat 1712.981 kb on + strandat 1712.990 kb on - strandat 1713.009 kb on - strandat 1713.058 kb on - strandat 1713.091 kb on + strandat 1713.091 kb on + strandat 1713.140 kb on - strandat 1713.165 kb on - strandat 1713.179 kb on + strandat 1713.187 kb on - strandat 1713.264 kb on + strand, within CCNA_01593

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,711,760 + +0.4
1,711,768 - +1.1
1,711,781 - CCNA_01591 0.12 -0.4
1,711,844 - CCNA_01591 0.22 -1.3
1,711,870 + CCNA_01591 0.26 +0.3
1,711,884 + CCNA_01591 0.28 +2.8
1,711,890 - CCNA_01591 0.29 +0.1
1,711,936 - CCNA_01591 0.36 +1.1
1,711,996 + CCNA_01591 0.46 +0.6
1,712,033 + CCNA_01591 0.52 -1.2
1,712,039 - CCNA_01591 0.53 -0.8
1,712,062 - CCNA_01591 0.56 -1.1
1,712,165 - CCNA_01591 0.73 -2.4
1,712,304 - -1.9
1,712,339 - +0.1
1,712,399 - -1.4
1,712,422 - +0.5
1,712,539 + CCNA_01592 0.20 +0.9
1,712,548 - CCNA_01592 0.22 +0.9
1,712,562 - CCNA_01592 0.25 -1.1
1,712,611 + CCNA_01592 0.37 +1.4
1,712,682 + CCNA_01592 0.53 -0.3
1,712,800 + CCNA_01592 0.81 +0.4
1,712,959 + +0.5
1,712,967 - -0.1
1,712,981 + +0.1
1,712,990 - +2.0
1,713,009 - +0.0
1,713,058 - +0.6
1,713,091 + -1.1
1,713,091 + -0.4
1,713,140 - +0.2
1,713,165 - +1.5
1,713,179 + -0.6
1,713,187 - +0.3
1,713,264 + CCNA_01593 0.13 +0.5

Or see this region's nucleotide sequence