Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01377 and CCNA_01378 are separated by 295 nucleotides CCNA_01378 and CCNA_01379 are separated by 124 nucleotides CCNA_01379 and CCNA_01380 are separated by 128 nucleotides CCNA_01380 and CCNA_01381 are separated by 126 nucleotides
CCNA_01377: CCNA_01377 - hypothetical protein, at 1,492,093 to 1,492,239
_01377
CCNA_01378: CCNA_01378 - protein-L-isoaspartate O-methyltransferase, at 1,492,535 to 1,493,107
_01378
CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683
_01379
CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345
_01380
CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192
_01381
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1492.312 kb on - strand at 1492.324 kb on + strand at 1492.327 kb on - strand at 1492.334 kb on + strand at 1492.375 kb on + strand at 1492.375 kb on + strand at 1492.388 kb on + strand at 1492.494 kb on + strand at 1492.494 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.513 kb on + strand at 1492.521 kb on - strand at 1492.521 kb on - strand at 1492.569 kb on - strand at 1492.861 kb on + strand, within CCNA_01378 at 1493.100 kb on + strand at 1493.209 kb on + strand at 1493.246 kb on - strand at 1493.384 kb on + strand, within CCNA_01379 at 1493.479 kb on - strand, within CCNA_01379 at 1493.598 kb on + strand, within CCNA_01379 at 1493.643 kb on + strand, within CCNA_01379 at 1493.643 kb on + strand, within CCNA_01379 at 1493.648 kb on + strand, within CCNA_01379 at 1493.651 kb on - strand, within CCNA_01379 at 1493.653 kb on + strand, within CCNA_01379 at 1493.658 kb on + strand, within CCNA_01379 at 1493.658 kb on + strand, within CCNA_01379 at 1493.661 kb on - strand, within CCNA_01379 at 1493.663 kb on + strand, within CCNA_01379 at 1493.820 kb on + strand, within CCNA_01379 at 1493.825 kb on + strand, within CCNA_01379 at 1494.005 kb on + strand, within CCNA_01379 at 1494.066 kb on + strand, within CCNA_01379 at 1494.189 kb on + strand, within CCNA_01379 at 1494.234 kb on + strand, within CCNA_01379 at 1494.344 kb on + strand, within CCNA_01379 at 1494.344 kb on + strand, within CCNA_01379 at 1494.352 kb on - strand, within CCNA_01379 at 1494.408 kb on + strand, within CCNA_01379 at 1494.430 kb on + strand, within CCNA_01379 at 1494.430 kb on + strand, within CCNA_01379 at 1494.435 kb on + strand, within CCNA_01379 at 1494.438 kb on - strand, within CCNA_01379 at 1494.448 kb on - strand, within CCNA_01379 at 1494.461 kb on + strand, within CCNA_01379 at 1494.528 kb on - strand, within CCNA_01379 at 1494.699 kb on + strand at 1494.717 kb on - strand at 1494.765 kb on + strand at 1495.348 kb on + strand at 1495.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,492,312 - +0.9 1,492,324 + -0.5 1,492,327 - -0.7 1,492,334 + -1.6 1,492,375 + +0.9 1,492,375 + -0.5 1,492,388 + +1.4 1,492,494 + +0.4 1,492,494 + +0.7 1,492,495 + -0.2 1,492,495 + +0.6 1,492,495 + -2.1 1,492,495 + -1.1 1,492,495 + -0.4 1,492,495 + +0.3 1,492,495 + +1.9 1,492,495 + +0.1 1,492,502 - -0.9 1,492,502 - +0.3 1,492,502 - -2.1 1,492,502 - +0.4 1,492,503 - -0.1 1,492,503 - -0.3 1,492,503 - -2.2 1,492,503 - -0.7 1,492,503 - -0.7 1,492,503 - -2.9 1,492,513 + +0.7 1,492,521 - +0.7 1,492,521 - -1.6 1,492,569 - -1.8 1,492,861 + CCNA_01378 0.57 +0.3 1,493,100 + +0.6 1,493,209 + +0.9 1,493,246 - +2.6 1,493,384 + CCNA_01379 0.10 +0.1 1,493,479 - CCNA_01379 0.17 -0.6 1,493,598 + CCNA_01379 0.25 +0.9 1,493,643 + CCNA_01379 0.28 -1.0 1,493,643 + CCNA_01379 0.28 +0.4 1,493,648 + CCNA_01379 0.29 +1.1 1,493,651 - CCNA_01379 0.29 -0.4 1,493,653 + CCNA_01379 0.29 +0.5 1,493,658 + CCNA_01379 0.29 +0.7 1,493,658 + CCNA_01379 0.29 -0.9 1,493,661 - CCNA_01379 0.30 -1.2 1,493,663 + CCNA_01379 0.30 -0.6 1,493,820 + CCNA_01379 0.40 -1.7 1,493,825 + CCNA_01379 0.41 -1.2 1,494,005 + CCNA_01379 0.53 -1.7 1,494,066 + CCNA_01379 0.57 +1.1 1,494,189 + CCNA_01379 0.66 -0.4 1,494,234 + CCNA_01379 0.69 -1.1 1,494,344 + CCNA_01379 0.77 -0.9 1,494,344 + CCNA_01379 0.77 -0.7 1,494,352 - CCNA_01379 0.77 +1.5 1,494,408 + CCNA_01379 0.81 +0.9 1,494,430 + CCNA_01379 0.83 +0.5 1,494,430 + CCNA_01379 0.83 -0.3 1,494,435 + CCNA_01379 0.83 +1.6 1,494,438 - CCNA_01379 0.83 -0.2 1,494,448 - CCNA_01379 0.84 +1.1 1,494,461 + CCNA_01379 0.85 +0.3 1,494,528 - CCNA_01379 0.89 -0.5 1,494,699 + -0.0 1,494,717 - +0.1 1,494,765 + -0.7 1,495,348 + +1.1 1,495,410 - -0.4
Or see this region's nucleotide sequence