Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01332 and CCNA_01333 are separated by 443 nucleotides CCNA_01333 and CCNA_01334 are separated by 166 nucleotides CCNA_01334 and CCNA_01335 overlap by 1 nucleotides
CCNA_01332: CCNA_01332 - LSU ribosomal protein L17P, at 1,445,475 to 1,445,888
_01332
CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724
_01333
CCNA_01334: CCNA_01334 - ABC2-family membrane transporter, at 1,446,891 to 1,447,721
_01334
CCNA_01335: CCNA_01335 - ABC-type multidrug transport system, ATPase component, at 1,447,721 to 1,448,638
_01335
Position (kb)
1446
1447 Strain fitness (log2 ratio)
-1
0
1
2 at 1445.384 kb on + strand at 1445.849 kb on + strand at 1445.856 kb on + strand at 1445.968 kb on - strand at 1445.990 kb on + strand at 1445.999 kb on - strand at 1446.008 kb on + strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.076 kb on - strand at 1446.116 kb on + strand at 1446.116 kb on + strand at 1446.116 kb on + strand at 1446.184 kb on + strand at 1446.234 kb on - strand at 1446.307 kb on + strand at 1446.577 kb on + strand, within CCNA_01333 at 1446.644 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.675 kb on + strand, within CCNA_01333 at 1446.722 kb on - strand at 1446.761 kb on + strand at 1446.764 kb on - strand at 1446.794 kb on + strand at 1446.802 kb on - strand at 1446.810 kb on + strand at 1446.835 kb on - strand at 1446.837 kb on - strand at 1446.837 kb on - strand at 1446.869 kb on + strand at 1446.929 kb on - strand at 1446.952 kb on + strand at 1446.952 kb on + strand at 1446.982 kb on - strand, within CCNA_01334 at 1447.000 kb on + strand, within CCNA_01334 at 1447.005 kb on + strand, within CCNA_01334 at 1447.010 kb on + strand, within CCNA_01334 at 1447.035 kb on + strand, within CCNA_01334 at 1447.070 kb on - strand, within CCNA_01334 at 1447.084 kb on + strand, within CCNA_01334 at 1447.092 kb on - strand, within CCNA_01334 at 1447.111 kb on + strand, within CCNA_01334 at 1447.111 kb on + strand, within CCNA_01334 at 1447.125 kb on + strand, within CCNA_01334 at 1447.195 kb on - strand, within CCNA_01334 at 1447.215 kb on + strand, within CCNA_01334 at 1447.223 kb on - strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.360 kb on + strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.368 kb on - strand, within CCNA_01334 at 1447.414 kb on - strand, within CCNA_01334 at 1447.415 kb on - strand, within CCNA_01334 at 1447.415 kb on - strand, within CCNA_01334 at 1447.417 kb on + strand, within CCNA_01334 at 1447.429 kb on + strand, within CCNA_01334 at 1447.429 kb on + strand, within CCNA_01334 at 1447.437 kb on - strand, within CCNA_01334 at 1447.489 kb on + strand, within CCNA_01334 at 1447.509 kb on + strand, within CCNA_01334 at 1447.534 kb on + strand, within CCNA_01334 at 1447.539 kb on - strand, within CCNA_01334 at 1447.552 kb on - strand, within CCNA_01334 at 1447.553 kb on + strand, within CCNA_01334 at 1447.607 kb on - strand, within CCNA_01334 at 1447.612 kb on - strand, within CCNA_01334 at 1447.630 kb on - strand, within CCNA_01334 at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand at 1447.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,445,384 + +1.1 1,445,849 + -0.5 1,445,856 + -1.1 1,445,968 - -0.2 1,445,990 + +1.4 1,445,999 - +0.3 1,446,008 + -1.7 1,446,046 - -0.1 1,446,046 - +0.3 1,446,046 - -0.1 1,446,076 - +0.5 1,446,116 + +1.1 1,446,116 + -0.7 1,446,116 + -0.5 1,446,184 + +0.0 1,446,234 - -0.4 1,446,307 + +0.6 1,446,577 + CCNA_01333 0.62 +0.2 1,446,644 - CCNA_01333 0.79 -0.1 1,446,649 - CCNA_01333 0.81 +1.2 1,446,649 - CCNA_01333 0.81 +2.2 1,446,675 + CCNA_01333 0.87 +0.8 1,446,722 - +0.4 1,446,761 + +1.2 1,446,764 - -1.7 1,446,794 + -0.3 1,446,802 - -0.6 1,446,810 + +1.1 1,446,835 - -0.4 1,446,837 - -0.7 1,446,837 - +1.6 1,446,869 + +0.3 1,446,929 - +0.3 1,446,952 + +0.2 1,446,952 + -0.4 1,446,982 - CCNA_01334 0.11 +0.8 1,447,000 + CCNA_01334 0.13 +1.3 1,447,005 + CCNA_01334 0.14 -1.0 1,447,010 + CCNA_01334 0.14 +0.4 1,447,035 + CCNA_01334 0.17 +1.3 1,447,070 - CCNA_01334 0.22 +1.1 1,447,084 + CCNA_01334 0.23 +0.3 1,447,092 - CCNA_01334 0.24 +0.6 1,447,111 + CCNA_01334 0.26 +0.7 1,447,111 + CCNA_01334 0.26 +0.9 1,447,125 + CCNA_01334 0.28 -0.6 1,447,195 - CCNA_01334 0.37 -0.7 1,447,215 + CCNA_01334 0.39 +1.3 1,447,223 - CCNA_01334 0.40 +0.2 1,447,360 + CCNA_01334 0.56 +2.0 1,447,360 + CCNA_01334 0.56 -0.5 1,447,360 + CCNA_01334 0.56 +0.5 1,447,360 + CCNA_01334 0.56 +0.8 1,447,360 + CCNA_01334 0.56 -0.5 1,447,360 + CCNA_01334 0.56 +0.2 1,447,360 + CCNA_01334 0.56 +2.2 1,447,360 + CCNA_01334 0.56 +0.9 1,447,360 + CCNA_01334 0.56 +0.3 1,447,360 + CCNA_01334 0.56 -1.6 1,447,368 - CCNA_01334 0.57 +0.5 1,447,368 - CCNA_01334 0.57 +0.1 1,447,368 - CCNA_01334 0.57 -0.2 1,447,368 - CCNA_01334 0.57 +0.4 1,447,368 - CCNA_01334 0.57 +0.4 1,447,368 - CCNA_01334 0.57 +1.3 1,447,414 - CCNA_01334 0.63 -0.7 1,447,415 - CCNA_01334 0.63 -0.6 1,447,415 - CCNA_01334 0.63 -1.3 1,447,417 + CCNA_01334 0.63 +0.5 1,447,429 + CCNA_01334 0.65 +0.5 1,447,429 + CCNA_01334 0.65 -0.9 1,447,437 - CCNA_01334 0.66 +0.8 1,447,489 + CCNA_01334 0.72 +0.3 1,447,509 + CCNA_01334 0.74 -0.4 1,447,534 + CCNA_01334 0.77 -0.1 1,447,539 - CCNA_01334 0.78 +0.5 1,447,552 - CCNA_01334 0.80 +0.4 1,447,553 + CCNA_01334 0.80 -1.2 1,447,607 - CCNA_01334 0.86 +1.0 1,447,612 - CCNA_01334 0.87 +2.0 1,447,630 - CCNA_01334 0.89 +0.3 1,447,662 - +1.2 1,447,662 - +1.2 1,447,662 - -0.4 1,447,662 - +1.8 1,447,662 - +1.1
Or see this region's nucleotide sequence