Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01237

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01234 and CCNA_01235 are separated by 63 nucleotidesCCNA_01235 and CCNA_01236 are separated by 63 nucleotidesCCNA_01236 and CCNA_01237 overlap by 4 nucleotidesCCNA_01237 and CCNA_01238 are separated by 154 nucleotidesCCNA_01238 and CCNA_01239 are separated by 112 nucleotides CCNA_01234: CCNA_01234 - metal-dependent hydrolase, at 1,361,248 to 1,362,339 _01234 CCNA_01235: CCNA_01235 - AcrR-family transcriptional regulator, at 1,362,403 to 1,363,035 _01235 CCNA_01236: CCNA_01236 - general stress protein GsiB, at 1,363,099 to 1,363,332 _01236 CCNA_01237: CCNA_01237 - hypothetical protein, at 1,363,329 to 1,363,481 _01237 CCNA_01238: CCNA_01238 - EF-hand domain protein, at 1,363,636 to 1,364,364 _01238 CCNA_01239: CCNA_01239 - two-component sensor histidine kinase, at 1,364,477 to 1,365,904 _01239 Position (kb) 1363 1364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1362.367 kb on + strandat 1362.367 kb on + strandat 1362.375 kb on - strandat 1362.375 kb on - strandat 1362.375 kb on - strandat 1362.377 kb on + strandat 1362.379 kb on + strandat 1362.389 kb on + strandat 1362.392 kb on - strandat 1362.422 kb on + strandat 1362.489 kb on + strand, within CCNA_01235at 1362.519 kb on + strand, within CCNA_01235at 1362.564 kb on + strand, within CCNA_01235at 1362.632 kb on + strand, within CCNA_01235at 1362.651 kb on + strand, within CCNA_01235at 1362.685 kb on + strand, within CCNA_01235at 1362.687 kb on + strand, within CCNA_01235at 1362.693 kb on - strand, within CCNA_01235at 1362.695 kb on - strand, within CCNA_01235at 1362.695 kb on - strand, within CCNA_01235at 1362.695 kb on - strand, within CCNA_01235at 1362.695 kb on - strand, within CCNA_01235at 1362.695 kb on - strand, within CCNA_01235at 1362.773 kb on - strand, within CCNA_01235at 1362.776 kb on + strand, within CCNA_01235at 1362.790 kb on + strand, within CCNA_01235at 1362.800 kb on - strand, within CCNA_01235at 1362.822 kb on + strand, within CCNA_01235at 1362.830 kb on - strand, within CCNA_01235at 1362.839 kb on - strand, within CCNA_01235at 1362.916 kb on + strand, within CCNA_01235at 1362.923 kb on + strand, within CCNA_01235at 1362.931 kb on - strand, within CCNA_01235at 1363.009 kb on + strandat 1363.011 kb on + strandat 1363.011 kb on + strandat 1363.011 kb on + strandat 1363.096 kb on + strandat 1363.120 kb on - strandat 1363.142 kb on - strand, within CCNA_01236at 1363.200 kb on - strand, within CCNA_01236at 1363.245 kb on + strand, within CCNA_01236at 1363.245 kb on + strand, within CCNA_01236at 1363.351 kb on - strand, within CCNA_01237at 1363.395 kb on - strand, within CCNA_01237at 1363.423 kb on - strand, within CCNA_01237at 1363.442 kb on + strand, within CCNA_01237at 1363.450 kb on - strand, within CCNA_01237at 1363.450 kb on - strand, within CCNA_01237at 1363.569 kb on + strandat 1363.581 kb on + strandat 1363.606 kb on + strandat 1363.729 kb on - strand, within CCNA_01238at 1363.731 kb on + strand, within CCNA_01238at 1363.763 kb on + strand, within CCNA_01238at 1363.763 kb on + strand, within CCNA_01238at 1363.765 kb on + strand, within CCNA_01238at 1363.915 kb on - strand, within CCNA_01238at 1363.947 kb on + strand, within CCNA_01238at 1363.947 kb on + strand, within CCNA_01238at 1364.012 kb on + strand, within CCNA_01238at 1364.074 kb on - strand, within CCNA_01238at 1364.176 kb on - strand, within CCNA_01238at 1364.210 kb on + strand, within CCNA_01238at 1364.281 kb on + strand, within CCNA_01238at 1364.290 kb on + strand, within CCNA_01238at 1364.314 kb on + strandat 1364.322 kb on - strandat 1364.322 kb on - strandat 1364.372 kb on + strandat 1364.380 kb on + strandat 1364.380 kb on - strandat 1364.397 kb on + strandat 1364.454 kb on + strandat 1364.462 kb on - strandat 1364.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,362,367 + -0.2
1,362,367 + +1.0
1,362,375 - -0.5
1,362,375 - +0.5
1,362,375 - -1.2
1,362,377 + -2.0
1,362,379 + +0.1
1,362,389 + +0.4
1,362,392 - -1.4
1,362,422 + +0.4
1,362,489 + CCNA_01235 0.14 +0.1
1,362,519 + CCNA_01235 0.18 +0.6
1,362,564 + CCNA_01235 0.25 +0.8
1,362,632 + CCNA_01235 0.36 -0.0
1,362,651 + CCNA_01235 0.39 +0.3
1,362,685 + CCNA_01235 0.45 -0.7
1,362,687 + CCNA_01235 0.45 -0.3
1,362,693 - CCNA_01235 0.46 -0.4
1,362,695 - CCNA_01235 0.46 +0.7
1,362,695 - CCNA_01235 0.46 -0.4
1,362,695 - CCNA_01235 0.46 +1.0
1,362,695 - CCNA_01235 0.46 +0.6
1,362,695 - CCNA_01235 0.46 +2.2
1,362,773 - CCNA_01235 0.58 +0.8
1,362,776 + CCNA_01235 0.59 +1.0
1,362,790 + CCNA_01235 0.61 +0.5
1,362,800 - CCNA_01235 0.63 +0.6
1,362,822 + CCNA_01235 0.66 +0.5
1,362,830 - CCNA_01235 0.67 +1.0
1,362,839 - CCNA_01235 0.69 -1.1
1,362,916 + CCNA_01235 0.81 +0.4
1,362,923 + CCNA_01235 0.82 +1.2
1,362,931 - CCNA_01235 0.83 -0.1
1,363,009 + +1.1
1,363,011 + +0.6
1,363,011 + +0.5
1,363,011 + -0.4
1,363,096 + +0.5
1,363,120 - +0.4
1,363,142 - CCNA_01236 0.18 +0.9
1,363,200 - CCNA_01236 0.43 +0.3
1,363,245 + CCNA_01236 0.62 -0.4
1,363,245 + CCNA_01236 0.62 +0.0
1,363,351 - CCNA_01237 0.14 +1.1
1,363,395 - CCNA_01237 0.43 +1.1
1,363,423 - CCNA_01237 0.61 -0.8
1,363,442 + CCNA_01237 0.74 +0.5
1,363,450 - CCNA_01237 0.79 +0.6
1,363,450 - CCNA_01237 0.79 +0.6
1,363,569 + +0.5
1,363,581 + +0.5
1,363,606 + -0.1
1,363,729 - CCNA_01238 0.13 -0.3
1,363,731 + CCNA_01238 0.13 -0.0
1,363,763 + CCNA_01238 0.17 +0.5
1,363,763 + CCNA_01238 0.17 -0.2
1,363,765 + CCNA_01238 0.18 +0.4
1,363,915 - CCNA_01238 0.38 -1.0
1,363,947 + CCNA_01238 0.43 +0.7
1,363,947 + CCNA_01238 0.43 -0.4
1,364,012 + CCNA_01238 0.52 -1.1
1,364,074 - CCNA_01238 0.60 +0.4
1,364,176 - CCNA_01238 0.74 -0.8
1,364,210 + CCNA_01238 0.79 +0.4
1,364,281 + CCNA_01238 0.88 +0.8
1,364,290 + CCNA_01238 0.90 -0.4
1,364,314 + -0.9
1,364,322 - -0.3
1,364,322 - +1.0
1,364,372 + -3.8
1,364,380 + +1.3
1,364,380 - -2.3
1,364,397 + -1.3
1,364,454 + -0.8
1,364,462 - +0.9
1,364,462 - +0.0

Or see this region's nucleotide sequence