Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00820

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00817 and CCNA_00818 are separated by 160 nucleotidesCCNA_00818 and CCNA_00820 are separated by 55 nucleotidesCCNA_00820 and CCNA_00821 are separated by 44 nucleotidesCCNA_00821 and CCNA_00822 are separated by 71 nucleotides CCNA_00817: CCNA_00817 - L-sorbosone dehydrogenase, at 879,956 to 881,284 _00817 CCNA_00818: CCNA_00818 - glutathione S-transferase, at 881,445 to 882,167 _00818 CCNA_00820: CCNA_00820 - 3-ketoacyl-CoA thiolase, at 882,223 to 883,395 _00820 CCNA_00821: CCNA_00821 - hypothetical protein, at 883,440 to 883,889 _00821 CCNA_00822: CCNA_00822 - hypothetical protein, at 883,961 to 884,305 _00822 Position (kb) 882 883 884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 881.272 kb on + strandat 881.272 kb on + strandat 881.272 kb on + strandat 881.280 kb on - strandat 881.280 kb on - strandat 881.306 kb on - strandat 881.310 kb on + strandat 881.332 kb on - strandat 881.336 kb on + strandat 881.336 kb on - strandat 881.357 kb on - strandat 881.386 kb on - strandat 881.392 kb on + strandat 881.392 kb on + strandat 881.400 kb on - strandat 881.452 kb on - strandat 881.576 kb on + strand, within CCNA_00818at 881.587 kb on - strand, within CCNA_00818at 881.587 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.648 kb on + strand, within CCNA_00818at 881.648 kb on - strand, within CCNA_00818at 881.649 kb on + strand, within CCNA_00818at 881.649 kb on + strand, within CCNA_00818at 881.672 kb on + strand, within CCNA_00818at 881.725 kb on + strand, within CCNA_00818at 881.743 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.766 kb on + strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.817 kb on - strand, within CCNA_00818at 881.821 kb on - strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.830 kb on - strand, within CCNA_00818at 881.830 kb on - strand, within CCNA_00818at 881.886 kb on + strand, within CCNA_00818at 881.936 kb on + strand, within CCNA_00818at 881.982 kb on + strand, within CCNA_00818at 881.983 kb on - strand, within CCNA_00818at 881.990 kb on - strand, within CCNA_00818at 881.998 kb on + strand, within CCNA_00818at 881.998 kb on - strand, within CCNA_00818at 881.998 kb on - strand, within CCNA_00818at 882.016 kb on - strand, within CCNA_00818at 882.016 kb on - strand, within CCNA_00818at 882.017 kb on - strand, within CCNA_00818at 882.050 kb on + strand, within CCNA_00818at 882.050 kb on - strand, within CCNA_00818at 882.058 kb on - strand, within CCNA_00818at 882.062 kb on + strand, within CCNA_00818at 882.062 kb on + strand, within CCNA_00818at 882.068 kb on + strand, within CCNA_00818at 882.095 kb on + strandat 882.136 kb on + strandat 882.136 kb on + strandat 882.136 kb on + strandat 882.137 kb on - strandat 882.167 kb on + strandat 882.170 kb on - strandat 882.175 kb on - strandat 882.188 kb on + strandat 882.216 kb on + strandat 882.229 kb on - strandat 882.229 kb on - strandat 882.229 kb on - strandat 882.250 kb on + strandat 882.303 kb on + strandat 882.311 kb on - strandat 882.311 kb on - strandat 882.311 kb on - strandat 882.319 kb on - strandat 882.319 kb on - strandat 882.323 kb on + strandat 882.331 kb on - strandat 882.333 kb on + strandat 882.339 kb on + strandat 882.349 kb on + strand, within CCNA_00820at 882.360 kb on + strand, within CCNA_00820at 882.386 kb on + strand, within CCNA_00820at 882.417 kb on + strand, within CCNA_00820at 882.443 kb on + strand, within CCNA_00820at 882.459 kb on - strand, within CCNA_00820at 882.499 kb on + strand, within CCNA_00820at 882.499 kb on + strand, within CCNA_00820at 882.515 kb on - strand, within CCNA_00820at 882.531 kb on - strand, within CCNA_00820at 882.557 kb on - strand, within CCNA_00820at 882.591 kb on - strand, within CCNA_00820at 882.598 kb on + strand, within CCNA_00820at 882.607 kb on + strand, within CCNA_00820at 882.615 kb on - strand, within CCNA_00820at 882.623 kb on + strand, within CCNA_00820at 882.687 kb on + strand, within CCNA_00820at 882.789 kb on - strand, within CCNA_00820at 882.794 kb on - strand, within CCNA_00820at 882.859 kb on + strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.872 kb on + strand, within CCNA_00820at 882.872 kb on - strand, within CCNA_00820at 882.874 kb on + strand, within CCNA_00820at 882.895 kb on - strand, within CCNA_00820at 882.933 kb on + strand, within CCNA_00820at 882.941 kb on - strand, within CCNA_00820at 882.945 kb on - strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.963 kb on - strand, within CCNA_00820at 882.963 kb on - strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.008 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.051 kb on - strand, within CCNA_00820at 883.064 kb on + strand, within CCNA_00820at 883.097 kb on - strand, within CCNA_00820at 883.132 kb on - strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820at 883.168 kb on - strand, within CCNA_00820at 883.168 kb on - strand, within CCNA_00820at 883.168 kb on - strand, within CCNA_00820at 883.170 kb on + strand, within CCNA_00820at 883.170 kb on + strand, within CCNA_00820at 883.170 kb on + strand, within CCNA_00820at 883.177 kb on + strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.182 kb on + strand, within CCNA_00820at 883.185 kb on - strand, within CCNA_00820at 883.190 kb on - strand, within CCNA_00820at 883.234 kb on + strand, within CCNA_00820at 883.243 kb on - strand, within CCNA_00820at 883.255 kb on - strand, within CCNA_00820at 883.328 kb on + strandat 883.328 kb on + strandat 883.336 kb on - strandat 883.378 kb on + strandat 883.541 kb on - strand, within CCNA_00821at 883.566 kb on + strand, within CCNA_00821at 883.566 kb on + strand, within CCNA_00821at 883.567 kb on + strand, within CCNA_00821at 883.573 kb on + strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.582 kb on - strand, within CCNA_00821at 883.594 kb on + strand, within CCNA_00821at 883.606 kb on - strand, within CCNA_00821at 883.632 kb on + strand, within CCNA_00821at 883.640 kb on - strand, within CCNA_00821at 883.699 kb on - strand, within CCNA_00821at 883.718 kb on - strand, within CCNA_00821at 883.718 kb on - strand, within CCNA_00821at 883.726 kb on + strand, within CCNA_00821at 883.731 kb on + strand, within CCNA_00821at 883.739 kb on - strand, within CCNA_00821at 883.739 kb on - strand, within CCNA_00821at 883.741 kb on + strand, within CCNA_00821at 883.744 kb on - strand, within CCNA_00821at 883.744 kb on - strand, within CCNA_00821at 883.746 kb on + strand, within CCNA_00821at 883.749 kb on - strand, within CCNA_00821at 883.754 kb on - strand, within CCNA_00821at 883.778 kb on - strand, within CCNA_00821at 883.892 kb on - strandat 883.898 kb on + strandat 883.899 kb on + strandat 883.906 kb on - strandat 883.907 kb on - strandat 883.907 kb on - strandat 883.946 kb on + strandat 883.949 kb on - strandat 883.959 kb on - strandat 883.966 kb on - strandat 883.966 kb on - strandat 883.976 kb on - strandat 883.976 kb on - strandat 883.981 kb on - strandat 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.052 kb on - strand, within CCNA_00822at 884.064 kb on + strand, within CCNA_00822at 884.074 kb on + strand, within CCNA_00822at 884.082 kb on - strand, within CCNA_00822at 884.093 kb on + strand, within CCNA_00822at 884.101 kb on - strand, within CCNA_00822at 884.102 kb on + strand, within CCNA_00822at 884.108 kb on + strand, within CCNA_00822at 884.138 kb on + strand, within CCNA_00822at 884.171 kb on - strand, within CCNA_00822at 884.178 kb on - strand, within CCNA_00822at 884.195 kb on + strand, within CCNA_00822at 884.235 kb on + strand, within CCNA_00822at 884.235 kb on + strand, within CCNA_00822at 884.255 kb on + strand, within CCNA_00822at 884.273 kb on + strandat 884.281 kb on - strandat 884.295 kb on + strandat 884.296 kb on + strandat 884.301 kb on + strandat 884.304 kb on - strandat 884.309 kb on - strandat 884.314 kb on + strandat 884.348 kb on - strandat 884.348 kb on - strandat 884.367 kb on - strandat 884.367 kb on - strandat 884.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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881,272 + -0.0
881,272 + -1.1
881,272 + +1.0
881,280 - +0.2
881,280 - -0.0
881,306 - +3.3
881,310 + +1.0
881,332 - +0.2
881,336 + +1.4
881,336 - -1.6
881,357 - -2.5
881,386 - -0.2
881,392 + -0.4
881,392 + -1.1
881,400 - +1.4
881,452 - +3.5
881,576 + CCNA_00818 0.18 -0.1
881,587 - CCNA_00818 0.20 -0.9
881,587 - CCNA_00818 0.20 +1.7
881,589 - CCNA_00818 0.20 +0.5
881,589 - CCNA_00818 0.20 +0.2
881,640 + CCNA_00818 0.27 +1.7
881,640 + CCNA_00818 0.27 -0.0
881,640 + CCNA_00818 0.27 +0.4
881,648 + CCNA_00818 0.28 +0.6
881,648 - CCNA_00818 0.28 -0.8
881,649 + CCNA_00818 0.28 -0.5
881,649 + CCNA_00818 0.28 -2.6
881,672 + CCNA_00818 0.31 +2.2
881,725 + CCNA_00818 0.39 +0.2
881,743 + CCNA_00818 0.41 -3.3
881,747 + CCNA_00818 0.42 -2.9
881,747 + CCNA_00818 0.42 -1.0
881,747 + CCNA_00818 0.42 -0.8
881,755 - CCNA_00818 0.43 +0.5
881,766 + CCNA_00818 0.44 +0.1
881,774 - CCNA_00818 0.46 +0.7
881,774 - CCNA_00818 0.46 -1.2
881,774 - CCNA_00818 0.46 -0.9
881,774 - CCNA_00818 0.46 -0.8
881,774 - CCNA_00818 0.46 +0.5
881,817 - CCNA_00818 0.51 +0.5
881,821 - CCNA_00818 0.52 +0.4
881,822 + CCNA_00818 0.52 +0.1
881,822 + CCNA_00818 0.52 -0.0
881,822 + CCNA_00818 0.52 -1.9
881,830 - CCNA_00818 0.53 +0.2
881,830 - CCNA_00818 0.53 -0.3
881,886 + CCNA_00818 0.61 -0.4
881,936 + CCNA_00818 0.68 -0.3
881,982 + CCNA_00818 0.74 -0.8
881,983 - CCNA_00818 0.74 -2.4
881,990 - CCNA_00818 0.75 -3.5
881,998 + CCNA_00818 0.76 +1.3
881,998 - CCNA_00818 0.76 +0.4
881,998 - CCNA_00818 0.76 +0.7
882,016 - CCNA_00818 0.79 -0.9
882,016 - CCNA_00818 0.79 +1.3
882,017 - CCNA_00818 0.79 -2.5
882,050 + CCNA_00818 0.84 -0.3
882,050 - CCNA_00818 0.84 -0.1
882,058 - CCNA_00818 0.85 -0.6
882,062 + CCNA_00818 0.85 +0.2
882,062 + CCNA_00818 0.85 -0.2
882,068 + CCNA_00818 0.86 -0.5
882,095 + -0.1
882,136 + +0.3
882,136 + +0.2
882,136 + +0.0
882,137 - -0.2
882,167 + -0.5
882,170 - -0.3
882,175 - +0.9
882,188 + +0.3
882,216 + -0.7
882,229 - -0.0
882,229 - -1.6
882,229 - -1.5
882,250 + -1.1
882,303 + -1.3
882,311 - +0.0
882,311 - +0.2
882,311 - -0.9
882,319 - +0.5
882,319 - -1.1
882,323 + +0.4
882,331 - -0.6
882,333 + -0.8
882,339 + -0.6
882,349 + CCNA_00820 0.11 -0.0
882,360 + CCNA_00820 0.12 +0.7
882,386 + CCNA_00820 0.14 +0.3
882,417 + CCNA_00820 0.17 -1.6
882,443 + CCNA_00820 0.19 -0.8
882,459 - CCNA_00820 0.20 +0.0
882,499 + CCNA_00820 0.24 -0.3
882,499 + CCNA_00820 0.24 +1.4
882,515 - CCNA_00820 0.25 +0.5
882,531 - CCNA_00820 0.26 -0.1
882,557 - CCNA_00820 0.28 -0.3
882,591 - CCNA_00820 0.31 -0.3
882,598 + CCNA_00820 0.32 -0.6
882,607 + CCNA_00820 0.33 -1.1
882,615 - CCNA_00820 0.33 +0.5
882,623 + CCNA_00820 0.34 +2.6
882,687 + CCNA_00820 0.40 -0.4
882,789 - CCNA_00820 0.48 +1.3
882,794 - CCNA_00820 0.49 -1.7
882,859 + CCNA_00820 0.54 -0.5
882,867 - CCNA_00820 0.55 -1.0
882,867 - CCNA_00820 0.55 -0.8
882,872 + CCNA_00820 0.55 +1.3
882,872 - CCNA_00820 0.55 -1.1
882,874 + CCNA_00820 0.55 +0.3
882,895 - CCNA_00820 0.57 -1.5
882,933 + CCNA_00820 0.61 -1.4
882,941 - CCNA_00820 0.61 -0.0
882,945 - CCNA_00820 0.62 -0.3
882,960 + CCNA_00820 0.63 -0.3
882,963 - CCNA_00820 0.63 +0.3
882,963 - CCNA_00820 0.63 +0.6
883,003 + CCNA_00820 0.66 +0.3
883,003 + CCNA_00820 0.66 +0.3
883,008 + CCNA_00820 0.67 +1.0
883,010 + CCNA_00820 0.67 +2.0
883,018 - CCNA_00820 0.68 -1.4
883,018 - CCNA_00820 0.68 +0.1
883,051 - CCNA_00820 0.71 +0.5
883,064 + CCNA_00820 0.72 +0.8
883,097 - CCNA_00820 0.75 +0.1
883,132 - CCNA_00820 0.77 +0.0
883,160 + CCNA_00820 0.80 -0.7
883,168 - CCNA_00820 0.81 -1.5
883,168 - CCNA_00820 0.81 +1.1
883,168 - CCNA_00820 0.81 +0.3
883,170 + CCNA_00820 0.81 -1.3
883,170 + CCNA_00820 0.81 +1.7
883,170 + CCNA_00820 0.81 +1.3
883,177 + CCNA_00820 0.81 -0.1
883,178 - CCNA_00820 0.81 +0.2
883,178 - CCNA_00820 0.81 +0.3
883,178 - CCNA_00820 0.81 -2.8
883,182 + CCNA_00820 0.82 -1.1
883,185 - CCNA_00820 0.82 -1.3
883,190 - CCNA_00820 0.82 -0.6
883,234 + CCNA_00820 0.86 -0.1
883,243 - CCNA_00820 0.87 -0.1
883,255 - CCNA_00820 0.88 +1.5
883,328 + -1.8
883,328 + +1.2
883,336 - -1.3
883,378 + -0.4
883,541 - CCNA_00821 0.22 -1.5
883,566 + CCNA_00821 0.28 +1.1
883,566 + CCNA_00821 0.28 +0.6
883,567 + CCNA_00821 0.28 +0.8
883,573 + CCNA_00821 0.30 +0.8
883,574 - CCNA_00821 0.30 -0.8
883,574 - CCNA_00821 0.30 -1.5
883,574 - CCNA_00821 0.30 -0.2
883,574 - CCNA_00821 0.30 -0.1
883,582 - CCNA_00821 0.32 +0.4
883,594 + CCNA_00821 0.34 -0.3
883,606 - CCNA_00821 0.37 -0.0
883,632 + CCNA_00821 0.43 +1.0
883,640 - CCNA_00821 0.44 +1.7
883,699 - CCNA_00821 0.58 +1.3
883,718 - CCNA_00821 0.62 +0.1
883,718 - CCNA_00821 0.62 -0.9
883,726 + CCNA_00821 0.64 +0.3
883,731 + CCNA_00821 0.65 +0.2
883,739 - CCNA_00821 0.66 -0.2
883,739 - CCNA_00821 0.66 -0.1
883,741 + CCNA_00821 0.67 +0.4
883,744 - CCNA_00821 0.68 +1.1
883,744 - CCNA_00821 0.68 +1.7
883,746 + CCNA_00821 0.68 +0.6
883,749 - CCNA_00821 0.69 -0.3
883,754 - CCNA_00821 0.70 -0.4
883,778 - CCNA_00821 0.75 +3.0
883,892 - -0.0
883,898 + -0.0
883,899 + +0.2
883,906 - +1.6
883,907 - -1.8
883,907 - -1.1
883,946 + -1.1
883,949 - +0.3
883,959 - -0.4
883,966 - +0.6
883,966 - -2.1
883,976 - -0.0
883,976 - -0.0
883,981 - +0.1
884,001 + CCNA_00822 0.12 +1.0
884,001 + CCNA_00822 0.12 -1.7
884,001 + CCNA_00822 0.12 -0.8
884,001 + CCNA_00822 0.12 +0.2
884,009 - CCNA_00822 0.14 +0.6
884,052 - CCNA_00822 0.26 -0.2
884,064 + CCNA_00822 0.30 +0.7
884,074 + CCNA_00822 0.33 -1.9
884,082 - CCNA_00822 0.35 +0.6
884,093 + CCNA_00822 0.38 -2.5
884,101 - CCNA_00822 0.41 -0.4
884,102 + CCNA_00822 0.41 +0.2
884,108 + CCNA_00822 0.43 +0.5
884,138 + CCNA_00822 0.51 +0.6
884,171 - CCNA_00822 0.61 -1.0
884,178 - CCNA_00822 0.63 -2.7
884,195 + CCNA_00822 0.68 +0.5
884,235 + CCNA_00822 0.79 -0.4
884,235 + CCNA_00822 0.79 +3.0
884,255 + CCNA_00822 0.85 -1.8
884,273 + +0.7
884,281 - +0.1
884,295 + -0.9
884,296 + +0.6
884,301 + +0.1
884,304 - -0.2
884,309 - -3.3
884,314 + -0.2
884,348 - -0.1
884,348 - +0.8
884,367 - +0.1
884,367 - +1.3
884,389 + +0.4

Or see this region's nucleotide sequence