Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00666

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00665 and CCNA_00666 overlap by 4 nucleotidesCCNA_00666 and CCNA_00667 are separated by 61 nucleotides CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094 _00665 CCNA_00666: CCNA_00666 - response regulator receiver domain protein, at 723,091 to 723,444 _00666 CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 Position (kb) 723 724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 722.102 kb on + strand, within CCNA_00665at 722.129 kb on + strand, within CCNA_00665at 722.142 kb on - strand, within CCNA_00665at 722.170 kb on + strand, within CCNA_00665at 722.177 kb on + strand, within CCNA_00665at 722.185 kb on - strand, within CCNA_00665at 722.185 kb on - strand, within CCNA_00665at 722.190 kb on + strand, within CCNA_00665at 722.247 kb on - strand, within CCNA_00665at 722.291 kb on - strand, within CCNA_00665at 722.295 kb on + strand, within CCNA_00665at 722.303 kb on - strand, within CCNA_00665at 722.306 kb on + strand, within CCNA_00665at 722.401 kb on - strand, within CCNA_00665at 722.403 kb on + strand, within CCNA_00665at 722.411 kb on - strand, within CCNA_00665at 722.413 kb on - strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.475 kb on + strand, within CCNA_00665at 722.545 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.563 kb on - strand, within CCNA_00665at 722.563 kb on - strand, within CCNA_00665at 722.564 kb on - strand, within CCNA_00665at 722.570 kb on - strand, within CCNA_00665at 722.592 kb on + strand, within CCNA_00665at 722.690 kb on - strand, within CCNA_00665at 722.738 kb on + strand, within CCNA_00665at 722.739 kb on - strand, within CCNA_00665at 722.746 kb on - strand, within CCNA_00665at 722.746 kb on - strand, within CCNA_00665at 722.826 kb on + strand, within CCNA_00665at 722.832 kb on - strand, within CCNA_00665at 722.834 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.852 kb on - strand, within CCNA_00665at 722.897 kb on - strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.975 kb on - strand, within CCNA_00665at 722.978 kb on + strand, within CCNA_00665at 722.978 kb on + strand, within CCNA_00665at 722.998 kb on + strandat 723.046 kb on - strandat 723.046 kb on - strandat 723.083 kb on - strandat 723.098 kb on - strandat 723.098 kb on - strandat 723.105 kb on + strandat 723.120 kb on + strandat 723.135 kb on + strand, within CCNA_00666at 723.159 kb on - strand, within CCNA_00666at 723.169 kb on + strand, within CCNA_00666at 723.169 kb on - strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.212 kb on + strand, within CCNA_00666at 723.216 kb on - strand, within CCNA_00666at 723.220 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.239 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.293 kb on + strand, within CCNA_00666at 723.306 kb on - strand, within CCNA_00666at 723.316 kb on - strand, within CCNA_00666at 723.361 kb on + strand, within CCNA_00666at 723.371 kb on - strand, within CCNA_00666at 723.373 kb on + strand, within CCNA_00666at 723.393 kb on + strand, within CCNA_00666at 723.439 kb on + strandat 723.447 kb on + strandat 723.447 kb on - strandat 723.448 kb on + strandat 723.453 kb on + strandat 723.456 kb on - strandat 723.458 kb on + strandat 723.459 kb on + strandat 723.466 kb on - strandat 723.478 kb on + strandat 723.486 kb on - strandat 723.624 kb on - strandat 723.652 kb on - strand, within CCNA_00667at 723.705 kb on - strand, within CCNA_00667at 723.752 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.802 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.861 kb on + strand, within CCNA_00667at 723.883 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.908 kb on + strand, within CCNA_00667at 723.943 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.952 kb on + strand, within CCNA_00667at 723.953 kb on - strand, within CCNA_00667at 723.976 kb on + strand, within CCNA_00667at 723.999 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.024 kb on - strand, within CCNA_00667at 724.103 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.177 kb on + strand, within CCNA_00667at 724.179 kb on + strand, within CCNA_00667at 724.194 kb on + strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.276 kb on + strand, within CCNA_00667at 724.383 kb on + strand, within CCNA_00667at 724.388 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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722,102 + CCNA_00665 0.13 -0.7
722,129 + CCNA_00665 0.16 +0.2
722,142 - CCNA_00665 0.17 -1.0
722,170 + CCNA_00665 0.19 -1.3
722,177 + CCNA_00665 0.20 -0.1
722,185 - CCNA_00665 0.21 +0.4
722,185 - CCNA_00665 0.21 -1.0
722,190 + CCNA_00665 0.21 +0.1
722,247 - CCNA_00665 0.26 -2.8
722,291 - CCNA_00665 0.30 -0.2
722,295 + CCNA_00665 0.30 -0.4
722,303 - CCNA_00665 0.31 +0.2
722,306 + CCNA_00665 0.31 -0.3
722,401 - CCNA_00665 0.39 +1.0
722,403 + CCNA_00665 0.40 -0.1
722,411 - CCNA_00665 0.40 +0.4
722,413 - CCNA_00665 0.40 -0.5
722,435 + CCNA_00665 0.42 -0.3
722,443 - CCNA_00665 0.43 +0.5
722,443 - CCNA_00665 0.43 +1.3
722,443 - CCNA_00665 0.43 +1.4
722,443 - CCNA_00665 0.43 +0.6
722,443 - CCNA_00665 0.43 +0.5
722,475 + CCNA_00665 0.46 -0.1
722,545 + CCNA_00665 0.52 +0.0
722,556 + CCNA_00665 0.53 +1.2
722,556 + CCNA_00665 0.53 +1.0
722,563 - CCNA_00665 0.54 +0.5
722,563 - CCNA_00665 0.54 +1.0
722,564 - CCNA_00665 0.54 +1.4
722,570 - CCNA_00665 0.54 -1.5
722,592 + CCNA_00665 0.56 -0.3
722,690 - CCNA_00665 0.65 -1.6
722,738 + CCNA_00665 0.69 -0.8
722,739 - CCNA_00665 0.69 +0.1
722,746 - CCNA_00665 0.70 -0.7
722,746 - CCNA_00665 0.70 -1.4
722,826 + CCNA_00665 0.77 +0.3
722,832 - CCNA_00665 0.77 +0.0
722,834 + CCNA_00665 0.77 +0.2
722,843 + CCNA_00665 0.78 +0.9
722,843 + CCNA_00665 0.78 +0.0
722,843 + CCNA_00665 0.78 +0.6
722,851 - CCNA_00665 0.79 -1.0
722,851 - CCNA_00665 0.79 -0.2
722,851 - CCNA_00665 0.79 -0.7
722,852 - CCNA_00665 0.79 -0.1
722,897 - CCNA_00665 0.83 -2.3
722,923 + CCNA_00665 0.85 +0.2
722,931 - CCNA_00665 0.86 +0.5
722,975 - CCNA_00665 0.90 -0.6
722,978 + CCNA_00665 0.90 +0.8
722,978 + CCNA_00665 0.90 -0.3
722,998 + -0.3
723,046 - -0.3
723,046 - +0.5
723,083 - +0.6
723,098 - -1.2
723,098 - +2.4
723,105 + +0.3
723,120 + -0.2
723,135 + CCNA_00666 0.12 +1.0
723,159 - CCNA_00666 0.19 -1.2
723,169 + CCNA_00666 0.22 +0.8
723,169 - CCNA_00666 0.22 -0.7
723,170 + CCNA_00666 0.22 +1.0
723,170 + CCNA_00666 0.22 -1.4
723,178 - CCNA_00666 0.25 +0.1
723,178 - CCNA_00666 0.25 +0.2
723,208 + CCNA_00666 0.33 +0.5
723,212 + CCNA_00666 0.34 +0.6
723,216 - CCNA_00666 0.35 +1.1
723,220 - CCNA_00666 0.36 +0.2
723,221 - CCNA_00666 0.37 -0.0
723,221 - CCNA_00666 0.37 -0.0
723,221 - CCNA_00666 0.37 -0.9
723,239 - CCNA_00666 0.42 -0.8
723,258 - CCNA_00666 0.47 +0.7
723,258 - CCNA_00666 0.47 +0.1
723,293 + CCNA_00666 0.57 -0.8
723,306 - CCNA_00666 0.61 +0.3
723,316 - CCNA_00666 0.64 -0.0
723,361 + CCNA_00666 0.76 +0.7
723,371 - CCNA_00666 0.79 -2.0
723,373 + CCNA_00666 0.80 +0.0
723,393 + CCNA_00666 0.85 -0.1
723,439 + -0.5
723,447 + -0.5
723,447 - +1.7
723,448 + -1.0
723,453 + +2.1
723,456 - +0.7
723,458 + +0.5
723,459 + -1.2
723,466 - +0.3
723,478 + +0.2
723,486 - -0.4
723,624 - +0.4
723,652 - CCNA_00667 0.12 -1.1
723,705 - CCNA_00667 0.17 -0.7
723,752 + CCNA_00667 0.21 -1.8
723,797 + CCNA_00667 0.25 +0.7
723,797 + CCNA_00667 0.25 -1.8
723,797 + CCNA_00667 0.25 +0.4
723,797 + CCNA_00667 0.25 +0.7
723,802 + CCNA_00667 0.25 +0.0
723,805 - CCNA_00667 0.25 +0.4
723,805 - CCNA_00667 0.25 -0.6
723,861 + CCNA_00667 0.30 -1.3
723,883 + CCNA_00667 0.32 -0.6
723,889 + CCNA_00667 0.32 +0.7
723,889 + CCNA_00667 0.32 +0.4
723,908 + CCNA_00667 0.34 -0.4
723,943 + CCNA_00667 0.37 -1.3
723,950 + CCNA_00667 0.37 -0.6
723,952 + CCNA_00667 0.38 +1.0
723,953 - CCNA_00667 0.38 -1.0
723,976 + CCNA_00667 0.40 +0.2
723,999 + CCNA_00667 0.42 +2.6
724,016 + CCNA_00667 0.43 +1.0
724,016 + CCNA_00667 0.43 +1.0
724,016 + CCNA_00667 0.43 -0.4
724,016 + CCNA_00667 0.43 +0.2
724,024 - CCNA_00667 0.44 -2.9
724,103 + CCNA_00667 0.50 -0.1
724,126 + CCNA_00667 0.52 +1.9
724,126 + CCNA_00667 0.52 +1.3
724,134 - CCNA_00667 0.53 -0.7
724,177 + CCNA_00667 0.57 +0.7
724,179 + CCNA_00667 0.57 -1.2
724,194 + CCNA_00667 0.58 -1.5
724,202 - CCNA_00667 0.59 -0.4
724,202 - CCNA_00667 0.59 -1.7
724,220 + CCNA_00667 0.60 -0.8
724,220 + CCNA_00667 0.60 -1.2
724,255 + CCNA_00667 0.63 -1.3
724,263 - CCNA_00667 0.64 +2.5
724,263 - CCNA_00667 0.64 -0.1
724,263 - CCNA_00667 0.64 -1.6
724,276 + CCNA_00667 0.65 -1.6
724,383 + CCNA_00667 0.74 +0.2
724,388 + CCNA_00667 0.74 +0.0
724,419 + CCNA_00667 0.77 -0.1
724,419 + CCNA_00667 0.77 -1.4

Or see this region's nucleotide sequence