Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00302

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00301 and CCNA_00302 are separated by 4 nucleotidesCCNA_00302 and CCNA_00303 are separated by 35 nucleotides CCNA_00301: CCNA_00301 - phosphotransferase family protein, at 314,615 to 315,697 _00301 CCNA_00302: CCNA_00302 - imidazolonepropionase-related amidohydrolase, at 315,702 to 316,991 _00302 CCNA_00303: CCNA_00303 - tetraacyldisaccharide-1-P 4'-kinase, at 317,027 to 318,034 _00303 Position (kb) 315 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 314.734 kb on - strand, within CCNA_00301at 314.740 kb on - strand, within CCNA_00301at 314.745 kb on + strand, within CCNA_00301at 314.761 kb on + strand, within CCNA_00301at 314.761 kb on + strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.788 kb on - strand, within CCNA_00301at 314.851 kb on + strand, within CCNA_00301at 314.851 kb on + strand, within CCNA_00301at 314.854 kb on - strand, within CCNA_00301at 314.859 kb on - strand, within CCNA_00301at 314.859 kb on - strand, within CCNA_00301at 314.884 kb on + strand, within CCNA_00301at 314.886 kb on - strand, within CCNA_00301at 314.894 kb on + strand, within CCNA_00301at 314.894 kb on + strand, within CCNA_00301at 314.899 kb on + strand, within CCNA_00301at 314.902 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.945 kb on + strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.994 kb on + strand, within CCNA_00301at 315.024 kb on + strand, within CCNA_00301at 315.059 kb on + strand, within CCNA_00301at 315.059 kb on + strand, within CCNA_00301at 315.080 kb on + strand, within CCNA_00301at 315.080 kb on + strand, within CCNA_00301at 315.083 kb on + strand, within CCNA_00301at 315.088 kb on - strand, within CCNA_00301at 315.088 kb on - strand, within CCNA_00301at 315.090 kb on + strand, within CCNA_00301at 315.165 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.240 kb on - strand, within CCNA_00301at 315.259 kb on + strand, within CCNA_00301at 315.294 kb on + strand, within CCNA_00301at 315.322 kb on + strand, within CCNA_00301at 315.332 kb on + strand, within CCNA_00301at 315.332 kb on + strand, within CCNA_00301at 315.337 kb on + strand, within CCNA_00301at 315.340 kb on - strand, within CCNA_00301at 315.347 kb on - strand, within CCNA_00301at 315.361 kb on - strand, within CCNA_00301at 315.361 kb on - strand, within CCNA_00301at 315.361 kb on - strand, within CCNA_00301at 315.394 kb on + strand, within CCNA_00301at 315.402 kb on - strand, within CCNA_00301at 315.408 kb on + strand, within CCNA_00301at 315.408 kb on + strand, within CCNA_00301at 315.416 kb on - strand, within CCNA_00301at 315.430 kb on + strand, within CCNA_00301at 315.438 kb on + strand, within CCNA_00301at 315.446 kb on - strand, within CCNA_00301at 315.446 kb on - strand, within CCNA_00301at 315.487 kb on - strand, within CCNA_00301at 315.543 kb on + strand, within CCNA_00301at 315.561 kb on - strand, within CCNA_00301at 315.636 kb on - strandat 315.655 kb on + strandat 315.655 kb on + strandat 315.663 kb on - strandat 315.665 kb on + strandat 315.665 kb on + strandat 315.673 kb on - strandat 315.692 kb on + strandat 315.735 kb on - strandat 315.776 kb on + strandat 315.791 kb on + strandat 315.810 kb on - strandat 315.829 kb on - strandat 315.846 kb on - strand, within CCNA_00302at 315.918 kb on + strand, within CCNA_00302at 315.932 kb on - strand, within CCNA_00302at 315.934 kb on - strand, within CCNA_00302at 315.958 kb on + strand, within CCNA_00302at 315.998 kb on + strand, within CCNA_00302at 316.004 kb on + strand, within CCNA_00302at 316.037 kb on + strand, within CCNA_00302at 316.038 kb on - strand, within CCNA_00302at 316.083 kb on + strand, within CCNA_00302at 316.127 kb on + strand, within CCNA_00302at 316.127 kb on + strand, within CCNA_00302at 316.135 kb on - strand, within CCNA_00302at 316.183 kb on + strand, within CCNA_00302at 316.191 kb on - strand, within CCNA_00302at 316.230 kb on - strand, within CCNA_00302at 316.302 kb on - strand, within CCNA_00302at 316.315 kb on - strand, within CCNA_00302at 316.326 kb on - strand, within CCNA_00302at 316.356 kb on - strand, within CCNA_00302at 316.361 kb on - strand, within CCNA_00302at 316.366 kb on - strand, within CCNA_00302at 316.378 kb on + strand, within CCNA_00302at 316.396 kb on - strand, within CCNA_00302at 316.438 kb on + strand, within CCNA_00302at 316.438 kb on + strand, within CCNA_00302at 316.446 kb on - strand, within CCNA_00302at 316.446 kb on - strand, within CCNA_00302at 316.460 kb on - strand, within CCNA_00302at 316.541 kb on - strand, within CCNA_00302at 316.543 kb on - strand, within CCNA_00302at 316.545 kb on + strand, within CCNA_00302at 316.559 kb on + strand, within CCNA_00302at 316.642 kb on - strand, within CCNA_00302at 316.672 kb on + strand, within CCNA_00302at 316.680 kb on - strand, within CCNA_00302at 316.722 kb on - strand, within CCNA_00302at 316.787 kb on + strand, within CCNA_00302at 316.795 kb on - strand, within CCNA_00302at 316.795 kb on - strand, within CCNA_00302at 316.832 kb on + strand, within CCNA_00302at 316.832 kb on + strand, within CCNA_00302at 316.840 kb on - strand, within CCNA_00302at 316.902 kb on - strandat 316.916 kb on + strandat 316.923 kb on + strandat 316.931 kb on - strandat 316.950 kb on + strandat 316.988 kb on - strandat 316.988 kb on - strandat 316.988 kb on - strandat 316.993 kb on - strandat 316.995 kb on + strandat 317.016 kb on + strandat 317.025 kb on - strandat 317.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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314,734 - CCNA_00301 0.11 +0.5
314,740 - CCNA_00301 0.12 +0.4
314,745 + CCNA_00301 0.12 -0.1
314,761 + CCNA_00301 0.13 +0.2
314,761 + CCNA_00301 0.13 -1.9
314,769 - CCNA_00301 0.14 -0.1
314,769 - CCNA_00301 0.14 +0.0
314,788 - CCNA_00301 0.16 -0.8
314,851 + CCNA_00301 0.22 +0.3
314,851 + CCNA_00301 0.22 -1.1
314,854 - CCNA_00301 0.22 +0.2
314,859 - CCNA_00301 0.23 -0.2
314,859 - CCNA_00301 0.23 -0.1
314,884 + CCNA_00301 0.25 +1.1
314,886 - CCNA_00301 0.25 -0.3
314,894 + CCNA_00301 0.26 +0.0
314,894 + CCNA_00301 0.26 -0.1
314,899 + CCNA_00301 0.26 -0.2
314,902 - CCNA_00301 0.27 +1.1
314,907 - CCNA_00301 0.27 -0.4
314,907 - CCNA_00301 0.27 +0.0
314,926 + CCNA_00301 0.29 -0.8
314,926 + CCNA_00301 0.29 +0.3
314,926 + CCNA_00301 0.29 -0.4
314,934 - CCNA_00301 0.29 +0.2
314,934 - CCNA_00301 0.29 -1.1
314,934 - CCNA_00301 0.29 +0.7
314,938 + CCNA_00301 0.30 +0.2
314,938 + CCNA_00301 0.30 +0.6
314,938 + CCNA_00301 0.30 +0.5
314,945 + CCNA_00301 0.30 -2.2
314,946 - CCNA_00301 0.31 -0.7
314,994 + CCNA_00301 0.35 -2.2
315,024 + CCNA_00301 0.38 +0.6
315,059 + CCNA_00301 0.41 +0.0
315,059 + CCNA_00301 0.41 -0.7
315,080 + CCNA_00301 0.43 -1.3
315,080 + CCNA_00301 0.43 -0.2
315,083 + CCNA_00301 0.43 -0.2
315,088 - CCNA_00301 0.44 +0.7
315,088 - CCNA_00301 0.44 -1.3
315,090 + CCNA_00301 0.44 +0.8
315,165 + CCNA_00301 0.51 -0.7
315,175 + CCNA_00301 0.52 -0.6
315,175 + CCNA_00301 0.52 -1.4
315,175 + CCNA_00301 0.52 +0.7
315,175 + CCNA_00301 0.52 -1.3
315,175 + CCNA_00301 0.52 +1.6
315,175 + CCNA_00301 0.52 +0.5
315,175 + CCNA_00301 0.52 +0.7
315,183 - CCNA_00301 0.52 -1.3
315,183 - CCNA_00301 0.52 -2.4
315,183 - CCNA_00301 0.52 -0.5
315,240 - CCNA_00301 0.58 +1.0
315,259 + CCNA_00301 0.59 -1.4
315,294 + CCNA_00301 0.63 -0.1
315,322 + CCNA_00301 0.65 +2.0
315,332 + CCNA_00301 0.66 +0.3
315,332 + CCNA_00301 0.66 +0.8
315,337 + CCNA_00301 0.67 -0.1
315,340 - CCNA_00301 0.67 +1.1
315,347 - CCNA_00301 0.68 -0.4
315,361 - CCNA_00301 0.69 +2.4
315,361 - CCNA_00301 0.69 -0.7
315,361 - CCNA_00301 0.69 -1.7
315,394 + CCNA_00301 0.72 -1.2
315,402 - CCNA_00301 0.73 +0.5
315,408 + CCNA_00301 0.73 +0.2
315,408 + CCNA_00301 0.73 -1.2
315,416 - CCNA_00301 0.74 -1.3
315,430 + CCNA_00301 0.75 -0.1
315,438 + CCNA_00301 0.76 -0.9
315,446 - CCNA_00301 0.77 +0.9
315,446 - CCNA_00301 0.77 +0.6
315,487 - CCNA_00301 0.81 -2.8
315,543 + CCNA_00301 0.86 -0.2
315,561 - CCNA_00301 0.87 -1.4
315,636 - -1.8
315,655 + +0.8
315,655 + -0.1
315,663 - -1.3
315,665 + -0.2
315,665 + +0.1
315,673 - -1.5
315,692 + +1.2
315,735 - -0.8
315,776 + -1.0
315,791 + +0.4
315,810 - -2.8
315,829 - -0.8
315,846 - CCNA_00302 0.11 +0.3
315,918 + CCNA_00302 0.17 -0.2
315,932 - CCNA_00302 0.18 +1.3
315,934 - CCNA_00302 0.18 -0.1
315,958 + CCNA_00302 0.20 +1.0
315,998 + CCNA_00302 0.23 +0.4
316,004 + CCNA_00302 0.23 +0.1
316,037 + CCNA_00302 0.26 +0.3
316,038 - CCNA_00302 0.26 +0.6
316,083 + CCNA_00302 0.30 +0.5
316,127 + CCNA_00302 0.33 -0.8
316,127 + CCNA_00302 0.33 -0.1
316,135 - CCNA_00302 0.34 -0.1
316,183 + CCNA_00302 0.37 +0.6
316,191 - CCNA_00302 0.38 -0.1
316,230 - CCNA_00302 0.41 +1.1
316,302 - CCNA_00302 0.47 -1.3
316,315 - CCNA_00302 0.48 -0.0
316,326 - CCNA_00302 0.48 +0.5
316,356 - CCNA_00302 0.51 -0.3
316,361 - CCNA_00302 0.51 -0.7
316,366 - CCNA_00302 0.51 -1.2
316,378 + CCNA_00302 0.52 +0.6
316,396 - CCNA_00302 0.54 -0.4
316,438 + CCNA_00302 0.57 +1.2
316,438 + CCNA_00302 0.57 -0.5
316,446 - CCNA_00302 0.58 -0.6
316,446 - CCNA_00302 0.58 -0.1
316,460 - CCNA_00302 0.59 +1.0
316,541 - CCNA_00302 0.65 +2.0
316,543 - CCNA_00302 0.65 +1.2
316,545 + CCNA_00302 0.65 +1.7
316,559 + CCNA_00302 0.66 -1.1
316,642 - CCNA_00302 0.73 +0.1
316,672 + CCNA_00302 0.75 -0.2
316,680 - CCNA_00302 0.76 -0.6
316,722 - CCNA_00302 0.79 -0.4
316,787 + CCNA_00302 0.84 -0.2
316,795 - CCNA_00302 0.85 +1.1
316,795 - CCNA_00302 0.85 +0.3
316,832 + CCNA_00302 0.88 -1.2
316,832 + CCNA_00302 0.88 -0.4
316,840 - CCNA_00302 0.88 -0.6
316,902 - +1.6
316,916 + -1.1
316,923 + +0.6
316,931 - -1.6
316,950 + +0.8
316,988 - -1.2
316,988 - +0.1
316,988 - +0.3
316,993 - +0.3
316,995 + +0.2
317,016 + +1.1
317,025 - +0.9
317,040 + +0.1

Or see this region's nucleotide sequence