Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00167

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00166 and CCNA_00167 are separated by 240 nucleotidesCCNA_00167 and CCNA_00168 are separated by 84 nucleotides CCNA_00166: CCNA_00166 - putative transglutaminase-like cysteine proteinase, at 178,252 to 179,070 _00166 CCNA_00167: CCNA_00167 - metallophosphatase family protein, at 179,311 to 180,120 _00167 CCNA_00168: CCNA_00168 - polysaccharide export protein, at 180,205 to 180,801 _00168 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 178.338 kb on + strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.381 kb on + strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.432 kb on - strand, within CCNA_00166at 178.442 kb on - strand, within CCNA_00166at 178.449 kb on + strand, within CCNA_00166at 178.457 kb on - strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.540 kb on + strand, within CCNA_00166at 178.540 kb on + strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.545 kb on + strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.563 kb on - strand, within CCNA_00166at 178.589 kb on + strand, within CCNA_00166at 178.627 kb on + strand, within CCNA_00166at 178.649 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.672 kb on - strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.704 kb on - strand, within CCNA_00166at 178.719 kb on - strand, within CCNA_00166at 178.742 kb on - strand, within CCNA_00166at 178.764 kb on + strand, within CCNA_00166at 178.770 kb on - strand, within CCNA_00166at 178.816 kb on + strand, within CCNA_00166at 178.836 kb on - strand, within CCNA_00166at 178.861 kb on - strand, within CCNA_00166at 178.861 kb on - strand, within CCNA_00166at 178.867 kb on + strand, within CCNA_00166at 178.874 kb on + strand, within CCNA_00166at 178.890 kb on + strand, within CCNA_00166at 178.898 kb on - strand, within CCNA_00166at 178.943 kb on - strand, within CCNA_00166at 178.953 kb on - strand, within CCNA_00166at 178.962 kb on + strand, within CCNA_00166at 178.996 kb on + strandat 178.999 kb on - strandat 178.999 kb on - strandat 179.001 kb on + strandat 179.003 kb on + strandat 179.009 kb on - strandat 179.030 kb on + strandat 179.030 kb on + strandat 179.038 kb on - strandat 179.342 kb on - strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.385 kb on - strandat 179.387 kb on - strandat 179.389 kb on - strandat 179.389 kb on - strandat 179.392 kb on + strand, within CCNA_00167at 179.397 kb on + strand, within CCNA_00167at 179.405 kb on - strand, within CCNA_00167at 179.490 kb on + strand, within CCNA_00167at 179.522 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.549 kb on - strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.587 kb on + strand, within CCNA_00167at 179.595 kb on - strand, within CCNA_00167at 179.624 kb on + strand, within CCNA_00167at 179.624 kb on + strand, within CCNA_00167at 179.625 kb on + strand, within CCNA_00167at 179.646 kb on - strand, within CCNA_00167at 179.656 kb on - strand, within CCNA_00167at 179.664 kb on + strand, within CCNA_00167at 179.683 kb on + strand, within CCNA_00167at 179.683 kb on + strand, within CCNA_00167at 179.685 kb on + strand, within CCNA_00167at 179.691 kb on - strand, within CCNA_00167at 179.732 kb on - strand, within CCNA_00167at 179.734 kb on - strand, within CCNA_00167at 179.744 kb on + strand, within CCNA_00167at 179.751 kb on - strand, within CCNA_00167at 179.751 kb on - strand, within CCNA_00167at 179.752 kb on - strand, within CCNA_00167at 179.787 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.808 kb on + strand, within CCNA_00167at 179.859 kb on - strand, within CCNA_00167at 179.862 kb on + strand, within CCNA_00167at 179.868 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.903 kb on + strand, within CCNA_00167at 179.913 kb on + strand, within CCNA_00167at 179.958 kb on + strand, within CCNA_00167at 179.983 kb on - strand, within CCNA_00167at 180.015 kb on + strand, within CCNA_00167at 180.047 kb on - strandat 180.047 kb on - strandat 180.065 kb on + strandat 180.089 kb on - strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.122 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.267 kb on + strand, within CCNA_00168at 180.290 kb on + strand, within CCNA_00168at 180.292 kb on - strand, within CCNA_00168at 180.294 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.352 kb on + strand, within CCNA_00168at 180.355 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.380 kb on - strand, within CCNA_00168at 180.383 kb on + strand, within CCNA_00168at 180.385 kb on + strand, within CCNA_00168at 180.389 kb on + strand, within CCNA_00168at 180.392 kb on - strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.441 kb on - strand, within CCNA_00168at 180.449 kb on - strand, within CCNA_00168at 180.482 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.513 kb on - strand, within CCNA_00168at 180.516 kb on + strand, within CCNA_00168at 180.524 kb on - strand, within CCNA_00168at 180.539 kb on - strand, within CCNA_00168at 180.586 kb on - strand, within CCNA_00168at 180.588 kb on + strand, within CCNA_00168at 180.603 kb on - strand, within CCNA_00168at 180.631 kb on - strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.645 kb on - strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.746 kb on - strandat 180.746 kb on - strandat 180.746 kb on - strandat 180.781 kb on - strandat 180.854 kb on + strandat 180.872 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.919 kb on + strandat 180.961 kb on - strandat 180.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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178,338 + CCNA_00166 0.11 -0.9
178,346 - CCNA_00166 0.11 +0.6
178,381 + CCNA_00166 0.16 -0.1
178,389 - CCNA_00166 0.17 +0.7
178,389 - CCNA_00166 0.17 +1.7
178,389 - CCNA_00166 0.17 +1.1
178,389 - CCNA_00166 0.17 +0.1
178,432 - CCNA_00166 0.22 +0.4
178,442 - CCNA_00166 0.23 -0.4
178,449 + CCNA_00166 0.24 -0.7
178,457 - CCNA_00166 0.25 +0.2
178,502 + CCNA_00166 0.31 +1.1
178,502 + CCNA_00166 0.31 +0.1
178,502 + CCNA_00166 0.31 +1.9
178,502 + CCNA_00166 0.31 -0.2
178,502 + CCNA_00166 0.31 +0.1
178,510 - CCNA_00166 0.32 +0.5
178,510 - CCNA_00166 0.32 +0.2
178,510 - CCNA_00166 0.32 -0.1
178,510 - CCNA_00166 0.32 +0.1
178,510 - CCNA_00166 0.32 +0.5
178,535 + CCNA_00166 0.35 -0.5
178,535 + CCNA_00166 0.35 +1.6
178,535 + CCNA_00166 0.35 -1.5
178,540 + CCNA_00166 0.35 +0.9
178,540 + CCNA_00166 0.35 -0.1
178,543 - CCNA_00166 0.36 +0.5
178,543 - CCNA_00166 0.36 -0.0
178,543 - CCNA_00166 0.36 +0.3
178,543 - CCNA_00166 0.36 +0.7
178,545 + CCNA_00166 0.36 -0.8
178,548 - CCNA_00166 0.36 +0.9
178,548 - CCNA_00166 0.36 -0.5
178,548 - CCNA_00166 0.36 -0.8
178,563 - CCNA_00166 0.38 -1.8
178,589 + CCNA_00166 0.41 +0.2
178,627 + CCNA_00166 0.46 -1.1
178,649 + CCNA_00166 0.48 -0.6
178,654 + CCNA_00166 0.49 +0.6
178,662 - CCNA_00166 0.50 -0.1
178,662 - CCNA_00166 0.50 +0.3
178,664 + CCNA_00166 0.50 -1.4
178,672 - CCNA_00166 0.51 +0.0
178,696 + CCNA_00166 0.54 -1.0
178,696 + CCNA_00166 0.54 -0.8
178,704 - CCNA_00166 0.55 -1.9
178,719 - CCNA_00166 0.57 -1.0
178,742 - CCNA_00166 0.60 +0.8
178,764 + CCNA_00166 0.63 -3.4
178,770 - CCNA_00166 0.63 -0.2
178,816 + CCNA_00166 0.69 -0.2
178,836 - CCNA_00166 0.71 +0.2
178,861 - CCNA_00166 0.74 -1.6
178,861 - CCNA_00166 0.74 +0.6
178,867 + CCNA_00166 0.75 -0.8
178,874 + CCNA_00166 0.76 -1.8
178,890 + CCNA_00166 0.78 -1.8
178,898 - CCNA_00166 0.79 +0.3
178,943 - CCNA_00166 0.84 +0.5
178,953 - CCNA_00166 0.86 +0.2
178,962 + CCNA_00166 0.87 +0.3
178,996 + -1.0
178,999 - +0.3
178,999 - +0.5
179,001 + +0.2
179,003 + -0.0
179,009 - -0.5
179,030 + +0.3
179,030 + +0.8
179,038 - -0.8
179,342 - -0.0
179,379 + +0.7
179,379 + +0.2
179,379 + -0.2
179,385 - -0.7
179,387 - -0.9
179,389 - -1.6
179,389 - +0.1
179,392 + CCNA_00167 0.10 +0.3
179,397 + CCNA_00167 0.11 +0.5
179,405 - CCNA_00167 0.12 +0.7
179,490 + CCNA_00167 0.22 +0.6
179,522 + CCNA_00167 0.26 +0.4
179,543 + CCNA_00167 0.29 +0.4
179,543 + CCNA_00167 0.29 +0.9
179,543 + CCNA_00167 0.29 +0.9
179,549 - CCNA_00167 0.29 -0.2
179,551 - CCNA_00167 0.30 -1.3
179,551 - CCNA_00167 0.30 +0.3
179,587 + CCNA_00167 0.34 +1.6
179,595 - CCNA_00167 0.35 +1.4
179,624 + CCNA_00167 0.39 +0.6
179,624 + CCNA_00167 0.39 +0.9
179,625 + CCNA_00167 0.39 +0.5
179,646 - CCNA_00167 0.41 +1.9
179,656 - CCNA_00167 0.43 -1.5
179,664 + CCNA_00167 0.44 +1.1
179,683 + CCNA_00167 0.46 +0.7
179,683 + CCNA_00167 0.46 +2.2
179,685 + CCNA_00167 0.46 +0.0
179,691 - CCNA_00167 0.47 -1.2
179,732 - CCNA_00167 0.52 -0.9
179,734 - CCNA_00167 0.52 -1.4
179,744 + CCNA_00167 0.53 +1.0
179,751 - CCNA_00167 0.54 -0.9
179,751 - CCNA_00167 0.54 +0.1
179,752 - CCNA_00167 0.54 -1.4
179,787 + CCNA_00167 0.59 +0.0
179,798 + CCNA_00167 0.60 +0.5
179,798 + CCNA_00167 0.60 +0.3
179,798 + CCNA_00167 0.60 +1.1
179,798 + CCNA_00167 0.60 +0.4
179,798 + CCNA_00167 0.60 +1.3
179,798 + CCNA_00167 0.60 -0.3
179,798 + CCNA_00167 0.60 +0.5
179,806 - CCNA_00167 0.61 +0.2
179,806 - CCNA_00167 0.61 +1.1
179,806 - CCNA_00167 0.61 -0.3
179,808 + CCNA_00167 0.61 +0.3
179,859 - CCNA_00167 0.68 +0.3
179,862 + CCNA_00167 0.68 +1.6
179,868 + CCNA_00167 0.69 +0.9
179,873 + CCNA_00167 0.69 -0.7
179,873 + CCNA_00167 0.69 +1.8
179,873 + CCNA_00167 0.69 +0.3
179,903 + CCNA_00167 0.73 -1.5
179,913 + CCNA_00167 0.74 +0.1
179,958 + CCNA_00167 0.80 +0.5
179,983 - CCNA_00167 0.83 -0.5
180,015 + CCNA_00167 0.87 +0.2
180,047 - -0.1
180,047 - -1.2
180,065 + +0.4
180,089 - -0.0
180,115 + +1.5
180,115 + -1.7
180,115 + -0.2
180,115 + +0.7
180,122 - -0.1
180,123 - +1.1
180,123 - -0.7
180,123 - +2.9
180,123 - -1.2
180,267 + CCNA_00168 0.10 -0.1
180,290 + CCNA_00168 0.14 +0.7
180,292 - CCNA_00168 0.15 -1.1
180,294 + CCNA_00168 0.15 +0.0
180,295 + CCNA_00168 0.15 +0.4
180,300 + CCNA_00168 0.16 +0.4
180,300 + CCNA_00168 0.16 +0.4
180,300 + CCNA_00168 0.16 -0.7
180,352 + CCNA_00168 0.25 +0.1
180,355 - CCNA_00168 0.25 +1.8
180,360 - CCNA_00168 0.26 +0.8
180,360 - CCNA_00168 0.26 +0.3
180,360 - CCNA_00168 0.26 +1.4
180,372 + CCNA_00168 0.28 +0.7
180,372 + CCNA_00168 0.28 -0.1
180,380 - CCNA_00168 0.29 -0.3
180,383 + CCNA_00168 0.30 +1.0
180,385 + CCNA_00168 0.30 +0.7
180,389 + CCNA_00168 0.31 +1.2
180,392 - CCNA_00168 0.31 +0.9
180,433 + CCNA_00168 0.38 -0.8
180,433 + CCNA_00168 0.38 -0.2
180,441 - CCNA_00168 0.40 -1.0
180,449 - CCNA_00168 0.41 -0.8
180,482 + CCNA_00168 0.46 +0.7
180,492 + CCNA_00168 0.48 +0.3
180,492 + CCNA_00168 0.48 -0.6
180,500 - CCNA_00168 0.49 -0.3
180,500 - CCNA_00168 0.49 +2.9
180,505 + CCNA_00168 0.50 +0.2
180,505 + CCNA_00168 0.50 -0.6
180,513 - CCNA_00168 0.52 -0.7
180,516 + CCNA_00168 0.52 +1.0
180,524 - CCNA_00168 0.53 -0.1
180,539 - CCNA_00168 0.56 -0.1
180,586 - CCNA_00168 0.64 -0.3
180,588 + CCNA_00168 0.64 -0.1
180,603 - CCNA_00168 0.67 -2.1
180,631 - CCNA_00168 0.71 -0.2
180,637 + CCNA_00168 0.72 +0.1
180,637 + CCNA_00168 0.72 +0.0
180,645 - CCNA_00168 0.74 -1.6
180,734 - CCNA_00168 0.89 -0.6
180,746 - -1.6
180,746 - +0.3
180,746 - -1.0
180,781 - -0.7
180,854 + +0.5
180,872 - -0.5
180,895 - -0.5
180,895 - -0.5
180,895 - -0.4
180,895 - -0.1
180,895 - -1.0
180,919 + +0.7
180,961 - +0.0
180,961 - -0.2

Or see this region's nucleotide sequence