Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00078 and CCNA_00079 are separated by 87 nucleotides CCNA_00079 and CCNA_00080 are separated by 193 nucleotides CCNA_00080 and CCNA_00081 are separated by 34 nucleotides CCNA_00081 and CCNA_00082 are separated by 249 nucleotides
CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326
_00078
CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893
_00079
CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728
_00080
CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972
_00081
CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880
_00082
Position (kb)
84
85 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 83.087 kb on + strand, within CCNA_00078 at 83.087 kb on + strand, within CCNA_00078 at 83.122 kb on - strand, within CCNA_00078 at 83.165 kb on - strand at 83.165 kb on - strand at 83.165 kb on - strand at 83.181 kb on + strand at 83.199 kb on + strand at 83.220 kb on + strand at 83.222 kb on + strand at 83.287 kb on + strand at 83.287 kb on + strand at 83.290 kb on - strand at 83.295 kb on - strand at 83.295 kb on - strand at 83.322 kb on - strand at 83.322 kb on - strand at 83.333 kb on + strand at 83.333 kb on + strand at 83.333 kb on + strand at 83.338 kb on + strand at 83.340 kb on - strand at 83.341 kb on - strand at 83.341 kb on - strand at 83.459 kb on + strand at 83.494 kb on - strand, within CCNA_00079 at 83.494 kb on - strand, within CCNA_00079 at 83.537 kb on + strand, within CCNA_00079 at 83.538 kb on + strand, within CCNA_00079 at 83.630 kb on + strand, within CCNA_00079 at 83.645 kb on + strand, within CCNA_00079 at 83.739 kb on + strand, within CCNA_00079 at 83.768 kb on - strand, within CCNA_00079 at 83.781 kb on + strand, within CCNA_00079 at 83.783 kb on + strand, within CCNA_00079 at 83.838 kb on + strand, within CCNA_00079 at 83.968 kb on - strand at 84.196 kb on + strand, within CCNA_00080 at 84.196 kb on + strand, within CCNA_00080 at 84.453 kb on - strand, within CCNA_00080 at 84.458 kb on - strand, within CCNA_00080 at 84.541 kb on + strand, within CCNA_00080 at 84.551 kb on + strand, within CCNA_00080 at 84.559 kb on - strand, within CCNA_00080 at 84.594 kb on + strand, within CCNA_00080 at 84.602 kb on - strand, within CCNA_00080 at 84.653 kb on - strand, within CCNA_00080 at 84.751 kb on + strand at 84.753 kb on - strand at 84.758 kb on - strand at 84.758 kb on - strand at 84.766 kb on + strand at 84.769 kb on - strand at 84.782 kb on - strand at 84.795 kb on + strand, within CCNA_00081 at 84.830 kb on + strand, within CCNA_00081 at 84.835 kb on + strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.876 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.909 kb on - strand, within CCNA_00081 at 84.911 kb on - strand, within CCNA_00081 at 84.928 kb on + strand, within CCNA_00081 at 84.957 kb on + strand at 84.957 kb on + strand at 84.957 kb on + strand at 84.965 kb on - strand at 84.965 kb on - strand at 84.965 kb on - strand at 84.969 kb on - strand at 84.969 kb on - strand at 84.974 kb on + strand at 84.977 kb on - strand at 84.982 kb on - strand at 84.982 kb on - strand at 84.991 kb on - strand at 85.009 kb on + strand at 85.014 kb on + strand at 85.022 kb on - strand at 85.038 kb on - strand at 85.040 kb on + strand at 85.040 kb on + strand at 85.062 kb on + strand at 85.081 kb on + strand at 85.085 kb on + strand at 85.091 kb on - strand at 85.125 kb on + strand at 85.125 kb on + strand at 85.133 kb on - strand at 85.158 kb on - strand at 85.161 kb on - strand at 85.174 kb on + strand at 85.206 kb on + strand at 85.214 kb on - strand at 85.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 83,087 + CCNA_00078 0.87 -0.8 83,087 + CCNA_00078 0.87 +1.1 83,122 - CCNA_00078 0.89 +1.1 83,165 - -0.5 83,165 - -0.0 83,165 - +0.4 83,181 + -0.8 83,199 + +0.7 83,220 + +0.4 83,222 + +0.6 83,287 + +0.7 83,287 + +0.6 83,290 - +1.1 83,295 - +1.6 83,295 - -0.7 83,322 - +1.2 83,322 - +0.5 83,333 + -0.5 83,333 + -0.1 83,333 + -0.1 83,338 + -0.4 83,340 - +0.0 83,341 - -1.0 83,341 - +0.2 83,459 + -0.4 83,494 - CCNA_00079 0.17 +1.1 83,494 - CCNA_00079 0.17 +0.4 83,537 + CCNA_00079 0.26 -2.2 83,538 + CCNA_00079 0.26 -1.2 83,630 + CCNA_00079 0.45 -1.9 83,645 + CCNA_00079 0.48 +0.5 83,739 + CCNA_00079 0.68 -1.1 83,768 - CCNA_00079 0.74 -1.1 83,781 + CCNA_00079 0.76 -0.4 83,783 + CCNA_00079 0.77 -2.0 83,838 + CCNA_00079 0.88 -2.1 83,968 - +1.8 84,196 + CCNA_00080 0.17 +0.3 84,196 + CCNA_00080 0.17 +1.2 84,453 - CCNA_00080 0.57 +0.6 84,458 - CCNA_00080 0.58 +0.6 84,541 + CCNA_00080 0.71 +2.0 84,551 + CCNA_00080 0.72 +0.1 84,559 - CCNA_00080 0.74 +1.2 84,594 + CCNA_00080 0.79 -1.1 84,602 - CCNA_00080 0.80 -0.3 84,653 - CCNA_00080 0.88 +0.1 84,751 + +1.3 84,753 - -0.2 84,758 - +0.3 84,758 - +0.3 84,766 + -0.6 84,769 - +0.4 84,782 - -0.4 84,795 + CCNA_00081 0.15 -1.0 84,830 + CCNA_00081 0.32 +0.7 84,835 + CCNA_00081 0.34 +0.3 84,838 - CCNA_00081 0.36 -0.1 84,838 - CCNA_00081 0.36 +1.1 84,876 - CCNA_00081 0.54 -0.3 84,886 - CCNA_00081 0.59 +0.3 84,886 - CCNA_00081 0.59 +0.1 84,886 - CCNA_00081 0.59 +0.4 84,886 - CCNA_00081 0.59 -0.4 84,909 - CCNA_00081 0.70 +0.5 84,911 - CCNA_00081 0.70 +1.2 84,928 + CCNA_00081 0.79 +0.2 84,957 + +0.1 84,957 + -0.1 84,957 + -0.1 84,965 - -0.5 84,965 - +0.4 84,965 - -0.5 84,969 - -0.4 84,969 - -0.4 84,974 + -0.5 84,977 - +2.4 84,982 - -0.1 84,982 - -1.4 84,991 - +1.0 85,009 + -1.3 85,014 + -1.0 85,022 - +0.9 85,038 - +0.1 85,040 + +0.3 85,040 + +0.7 85,062 + +0.9 85,081 + +1.2 85,085 + +0.8 85,091 - +1.0 85,125 + +1.0 85,125 + +0.8 85,133 - +1.3 85,158 - -2.5 85,161 - -0.5 85,174 + -0.5 85,206 + +1.1 85,214 - -0.7 85,252 + +0.3
Or see this region's nucleotide sequence