Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27615

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27610 and ABID97_RS27615 overlap by 4 nucleotidesABID97_RS27615 and ABID97_RS27620 are separated by 10 nucleotidesABID97_RS27620 and ABID97_RS27625 are separated by 35 nucleotides ABID97_RS27610: ABID97_RS27610 - acyl-CoA dehydrogenase family protein, at 441,278 to 442,420 _RS27610 ABID97_RS27615: ABID97_RS27615 - class I adenylate-forming enzyme family protein, at 442,417 to 443,898 _RS27615 ABID97_RS27620: ABID97_RS27620 - crotonase/enoyl-CoA hydratase family protein, at 443,909 to 444,721 _RS27620 ABID97_RS27625: ABID97_RS27625 - NAD(P)-binding domain-containing protein, at 444,757 to 445,656 _RS27625 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1at 442.370 kb on + strandat 442.370 kb on + strandat 442.885 kb on + strand, within ABID97_RS27615at 443.045 kb on - strand, within ABID97_RS27615at 443.719 kb on + strand, within ABID97_RS27615at 443.720 kb on - strand, within ABID97_RS27615at 443.720 kb on - strand, within ABID97_RS27615at 443.896 kb on + strandat 444.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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442,370 + -0.5
442,370 + -0.6
442,885 + ABID97_RS27615 0.32 +1.4
443,045 - ABID97_RS27615 0.42 +0.6
443,719 + ABID97_RS27615 0.88 +0.1
443,720 - ABID97_RS27615 0.88 -0.3
443,720 - ABID97_RS27615 0.88 +0.5
443,896 + -0.1
444,720 - +0.1

Or see this region's nucleotide sequence