Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26400 and ABID97_RS26405 are separated by 124 nucleotides ABID97_RS26405 and ABID97_RS26410 overlap by 4 nucleotides ABID97_RS26410 and ABID97_RS26415 are separated by 38 nucleotides
ABID97_RS26400: ABID97_RS26400 - hypothetical protein, at 199,728 to 200,159
_RS26400
ABID97_RS26405: ABID97_RS26405 - hypothetical protein, at 200,284 to 200,604
_RS26405
ABID97_RS26410: ABID97_RS26410 - TolC family protein, at 200,601 to 202,025
_RS26410
ABID97_RS26415: ABID97_RS26415 - copper oxidase, at 202,064 to 203,479
_RS26415
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -1
0
1
2 at 199.629 kb on - strand at 199.681 kb on + strand at 199.681 kb on + strand at 199.682 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 200.377 kb on + strand, within ABID97_RS26405 at 201.249 kb on + strand, within ABID97_RS26410 at 201.250 kb on - strand, within ABID97_RS26410 at 201.819 kb on + strand, within ABID97_RS26410 at 201.972 kb on - strand at 201.972 kb on - strand at 202.347 kb on + strand, within ABID97_RS26415 at 202.355 kb on + strand, within ABID97_RS26415 at 202.355 kb on + strand, within ABID97_RS26415 at 202.356 kb on - strand, within ABID97_RS26415 at 202.538 kb on + strand, within ABID97_RS26415
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 199,629 - -0.2 199,681 + -0.1 199,681 + +0.5 199,682 - +1.4 199,717 - -0.3 199,717 - +2.1 200,377 + ABID97_RS26405 0.29 -0.4 201,249 + ABID97_RS26410 0.45 +1.0 201,250 - ABID97_RS26410 0.46 +1.2 201,819 + ABID97_RS26410 0.85 -0.5 201,972 - -1.0 201,972 - +0.5 202,347 + ABID97_RS26415 0.20 -0.2 202,355 + ABID97_RS26415 0.21 -0.2 202,355 + ABID97_RS26415 0.21 +0.3 202,356 - ABID97_RS26415 0.21 +0.4 202,538 + ABID97_RS26415 0.33 +2.0
Or see this region's nucleotide sequence