Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25790 and ABID97_RS25795 overlap by 11 nucleotides ABID97_RS25795 and ABID97_RS25800 are separated by 5 nucleotides ABID97_RS25800 and ABID97_RS25805 are separated by 4 nucleotides
ABID97_RS25790: ABID97_RS25790 - alkaline phosphatase family protein, at 78,842 to 80,545
_RS25790
ABID97_RS25795: ABID97_RS25795 - cupin domain-containing protein, at 80,535 to 80,987
_RS25795
ABID97_RS25800: ABID97_RS25800 - tripartite tricarboxylate transporter substrate binding protein, at 80,993 to 81,976
_RS25800
ABID97_RS25805: ABID97_RS25805 - alpha/beta hydrolase fold domain-containing protein, at 81,981 to 82,802
_RS25805
Position (kb) 80
81 Strain fitness (log2 ratio) -1
0
1 at 79.548 kb on - strand, within ABID97_RS25790 at 79.578 kb on - strand, within ABID97_RS25790 at 79.644 kb on - strand, within ABID97_RS25790 at 79.718 kb on + strand, within ABID97_RS25790 at 79.719 kb on - strand, within ABID97_RS25790 at 79.905 kb on - strand, within ABID97_RS25790 at 80.105 kb on + strand, within ABID97_RS25790 at 80.189 kb on + strand, within ABID97_RS25790 at 80.614 kb on - strand, within ABID97_RS25795 at 80.614 kb on - strand, within ABID97_RS25795 at 80.614 kb on - strand, within ABID97_RS25795 at 80.712 kb on + strand, within ABID97_RS25795 at 80.712 kb on + strand, within ABID97_RS25795 at 80.713 kb on - strand, within ABID97_RS25795 at 80.713 kb on - strand, within ABID97_RS25795 at 80.713 kb on - strand, within ABID97_RS25795 at 80.767 kb on - strand, within ABID97_RS25795 at 81.465 kb on - strand, within ABID97_RS25800
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 79,548 - ABID97_RS25790 0.41 -0.2 79,578 - ABID97_RS25790 0.43 -0.8 79,644 - ABID97_RS25790 0.47 +0.4 79,718 + ABID97_RS25790 0.51 -0.2 79,719 - ABID97_RS25790 0.51 -0.8 79,905 - ABID97_RS25790 0.62 -1.0 80,105 + ABID97_RS25790 0.74 -0.1 80,189 + ABID97_RS25790 0.79 +1.6 80,614 - ABID97_RS25795 0.17 -0.2 80,614 - ABID97_RS25795 0.17 -0.8 80,614 - ABID97_RS25795 0.17 -0.3 80,712 + ABID97_RS25795 0.39 -1.4 80,712 + ABID97_RS25795 0.39 -0.4 80,713 - ABID97_RS25795 0.39 +0.4 80,713 - ABID97_RS25795 0.39 -0.1 80,713 - ABID97_RS25795 0.39 -0.1 80,767 - ABID97_RS25795 0.51 +0.4 81,465 - ABID97_RS25800 0.48 -1.1
Or see this region's nucleotide sequence