Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24330 and ABID97_RS24335 are separated by 15 nucleotides ABID97_RS24335 and ABID97_RS24340 overlap by 4 nucleotides
ABID97_RS24330: ABID97_RS24330 - sigma 54-interacting transcriptional regulator, at 5,030,636 to 5,032,063
_RS24330
ABID97_RS24335: ABID97_RS24335 - TolC family protein, at 5,032,079 to 5,033,641
_RS24335
ABID97_RS24340: ABID97_RS24340 - HlyD family type I secretion periplasmic adaptor subunit, at 5,033,638 to 5,034,954
_RS24340
Position (kb) 5032
5033
5034 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.188 kb on + strand, within ABID97_RS24330 at 5031.189 kb on - strand, within ABID97_RS24330 at 5031.369 kb on - strand, within ABID97_RS24330 at 5031.687 kb on - strand, within ABID97_RS24330 at 5032.020 kb on - strand at 5032.081 kb on - strand at 5032.350 kb on + strand, within ABID97_RS24335 at 5032.350 kb on + strand, within ABID97_RS24335 at 5032.351 kb on - strand, within ABID97_RS24335 at 5032.351 kb on - strand, within ABID97_RS24335 at 5032.368 kb on + strand, within ABID97_RS24335 at 5032.368 kb on + strand, within ABID97_RS24335 at 5032.369 kb on - strand, within ABID97_RS24335 at 5032.369 kb on - strand, within ABID97_RS24335 at 5032.369 kb on - strand, within ABID97_RS24335 at 5032.369 kb on - strand, within ABID97_RS24335 at 5032.371 kb on + strand, within ABID97_RS24335 at 5032.372 kb on - strand, within ABID97_RS24335 at 5032.372 kb on - strand, within ABID97_RS24335 at 5032.908 kb on + strand, within ABID97_RS24335 at 5032.909 kb on - strand, within ABID97_RS24335 at 5033.125 kb on - strand, within ABID97_RS24335 at 5033.125 kb on - strand, within ABID97_RS24335 at 5033.274 kb on + strand, within ABID97_RS24335 at 5033.275 kb on - strand, within ABID97_RS24335 at 5033.310 kb on + strand, within ABID97_RS24335 at 5033.310 kb on + strand, within ABID97_RS24335 at 5033.311 kb on + strand, within ABID97_RS24335 at 5033.311 kb on - strand, within ABID97_RS24335 at 5033.466 kb on + strand, within ABID97_RS24335 at 5033.690 kb on + strand at 5033.690 kb on + strand at 5033.690 kb on + strand at 5033.690 kb on + strand at 5033.691 kb on - strand at 5033.691 kb on - strand at 5033.691 kb on - strand at 5033.691 kb on - strand at 5033.774 kb on + strand, within ABID97_RS24340 at 5033.774 kb on + strand, within ABID97_RS24340 at 5033.901 kb on - strand, within ABID97_RS24340 at 5034.506 kb on + strand, within ABID97_RS24340
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,031,188 + ABID97_RS24330 0.39 +0.1 5,031,188 + ABID97_RS24330 0.39 -0.3 5,031,188 + ABID97_RS24330 0.39 +0.2 5,031,189 - ABID97_RS24330 0.39 +2.0 5,031,369 - ABID97_RS24330 0.51 +0.3 5,031,687 - ABID97_RS24330 0.74 +0.3 5,032,020 - -0.3 5,032,081 - +0.1 5,032,350 + ABID97_RS24335 0.17 +1.0 5,032,350 + ABID97_RS24335 0.17 +1.1 5,032,351 - ABID97_RS24335 0.17 -0.2 5,032,351 - ABID97_RS24335 0.17 -0.1 5,032,368 + ABID97_RS24335 0.18 +0.4 5,032,368 + ABID97_RS24335 0.18 +0.6 5,032,369 - ABID97_RS24335 0.19 +0.4 5,032,369 - ABID97_RS24335 0.19 +1.8 5,032,369 - ABID97_RS24335 0.19 +0.6 5,032,369 - ABID97_RS24335 0.19 +0.2 5,032,371 + ABID97_RS24335 0.19 +1.3 5,032,372 - ABID97_RS24335 0.19 +0.4 5,032,372 - ABID97_RS24335 0.19 +0.2 5,032,908 + ABID97_RS24335 0.53 -0.6 5,032,909 - ABID97_RS24335 0.53 +0.4 5,033,125 - ABID97_RS24335 0.67 +0.3 5,033,125 - ABID97_RS24335 0.67 +0.2 5,033,274 + ABID97_RS24335 0.76 +4.5 5,033,275 - ABID97_RS24335 0.77 +0.5 5,033,310 + ABID97_RS24335 0.79 +0.5 5,033,310 + ABID97_RS24335 0.79 -0.2 5,033,311 + ABID97_RS24335 0.79 -0.4 5,033,311 - ABID97_RS24335 0.79 +0.3 5,033,466 + ABID97_RS24335 0.89 -0.9 5,033,690 + +0.2 5,033,690 + +0.3 5,033,690 + +0.8 5,033,690 + -0.1 5,033,691 - +0.1 5,033,691 - +0.4 5,033,691 - +0.9 5,033,691 - +0.1 5,033,774 + ABID97_RS24340 0.10 +1.6 5,033,774 + ABID97_RS24340 0.10 +4.6 5,033,901 - ABID97_RS24340 0.20 +0.2 5,034,506 + ABID97_RS24340 0.66 +0.1
Or see this region's nucleotide sequence