Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21040 and ABID97_RS21045 are separated by 67 nucleotides ABID97_RS21045 and ABID97_RS21050 overlap by 14 nucleotides ABID97_RS21050 and ABID97_RS21055 are separated by 107 nucleotides ABID97_RS21055 and ABID97_RS21060 overlap by 4 nucleotides
ABID97_RS21040: ABID97_RS21040 - MFS transporter, at 4,344,438 to 4,345,706
_RS21040
ABID97_RS21045: ABID97_RS21045 - RluA family pseudouridine synthase, at 4,345,774 to 4,346,449
_RS21045
ABID97_RS21050: ABID97_RS21050 - universal stress protein, at 4,346,436 to 4,346,876
_RS21050
ABID97_RS21055: ABID97_RS21055 - 2OG-Fe dioxygenase family protein, at 4,346,984 to 4,347,733
_RS21055
ABID97_RS21060: ABID97_RS21060 - DUF427 domain-containing protein, at 4,347,730 to 4,348,014
_RS21060
Position (kb) 4346
4347 Strain fitness (log2 ratio) -1
0
1 at 4345.513 kb on + strand, within ABID97_RS21040 at 4345.514 kb on - strand, within ABID97_RS21040 at 4345.558 kb on + strand, within ABID97_RS21040 at 4345.558 kb on + strand, within ABID97_RS21040 at 4345.559 kb on - strand, within ABID97_RS21040 at 4345.559 kb on - strand, within ABID97_RS21040 at 4345.559 kb on - strand, within ABID97_RS21040 at 4345.559 kb on - strand, within ABID97_RS21040 at 4345.559 kb on - strand, within ABID97_RS21040 at 4345.758 kb on + strand at 4345.758 kb on + strand at 4345.758 kb on + strand at 4345.759 kb on - strand at 4345.759 kb on - strand at 4345.759 kb on - strand at 4345.813 kb on + strand at 4345.813 kb on + strand at 4346.297 kb on - strand, within ABID97_RS21045 at 4346.297 kb on - strand, within ABID97_RS21045 at 4346.297 kb on - strand, within ABID97_RS21045 at 4346.297 kb on - strand, within ABID97_RS21045 at 4346.704 kb on + strand, within ABID97_RS21050 at 4346.704 kb on + strand, within ABID97_RS21050 at 4346.725 kb on + strand, within ABID97_RS21050 at 4346.726 kb on - strand, within ABID97_RS21050 at 4346.726 kb on - strand, within ABID97_RS21050 at 4346.726 kb on - strand, within ABID97_RS21050 at 4346.752 kb on + strand, within ABID97_RS21050 at 4346.753 kb on - strand, within ABID97_RS21050 at 4346.891 kb on + strand at 4346.939 kb on + strand at 4346.965 kb on - strand at 4347.028 kb on + strand at 4347.450 kb on + strand, within ABID97_RS21055 at 4347.451 kb on - strand, within ABID97_RS21055 at 4347.451 kb on - strand, within ABID97_RS21055 at 4347.558 kb on + strand, within ABID97_RS21055 at 4347.558 kb on + strand, within ABID97_RS21055 at 4347.660 kb on + strand at 4347.810 kb on - strand, within ABID97_RS21060 at 4347.812 kb on + strand, within ABID97_RS21060 at 4347.857 kb on + strand, within ABID97_RS21060 at 4347.857 kb on + strand, within ABID97_RS21060 at 4347.858 kb on - strand, within ABID97_RS21060 at 4347.860 kb on + strand, within ABID97_RS21060 at 4347.860 kb on + strand, within ABID97_RS21060 at 4347.861 kb on - strand, within ABID97_RS21060 at 4347.861 kb on - strand, within ABID97_RS21060 at 4347.861 kb on - strand, within ABID97_RS21060 at 4347.861 kb on - strand, within ABID97_RS21060
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 4,345,513 + ABID97_RS21040 0.85 -0.2 4,345,514 - ABID97_RS21040 0.85 +0.2 4,345,558 + ABID97_RS21040 0.88 +0.0 4,345,558 + ABID97_RS21040 0.88 -0.4 4,345,559 - ABID97_RS21040 0.88 -1.1 4,345,559 - ABID97_RS21040 0.88 -0.1 4,345,559 - ABID97_RS21040 0.88 -0.3 4,345,559 - ABID97_RS21040 0.88 -0.3 4,345,559 - ABID97_RS21040 0.88 -1.3 4,345,758 + -0.4 4,345,758 + +1.6 4,345,758 + -0.4 4,345,759 - -0.3 4,345,759 - +1.1 4,345,759 - +0.0 4,345,813 + -1.2 4,345,813 + +0.0 4,346,297 - ABID97_RS21045 0.77 -0.5 4,346,297 - ABID97_RS21045 0.77 -0.5 4,346,297 - ABID97_RS21045 0.77 -0.4 4,346,297 - ABID97_RS21045 0.77 +0.4 4,346,704 + ABID97_RS21050 0.61 +0.6 4,346,704 + ABID97_RS21050 0.61 +0.3 4,346,725 + ABID97_RS21050 0.66 +0.9 4,346,726 - ABID97_RS21050 0.66 +0.5 4,346,726 - ABID97_RS21050 0.66 +0.4 4,346,726 - ABID97_RS21050 0.66 -0.1 4,346,752 + ABID97_RS21050 0.72 +0.6 4,346,753 - ABID97_RS21050 0.72 +0.0 4,346,891 + -0.2 4,346,939 + -0.4 4,346,965 - -0.1 4,347,028 + -0.6 4,347,450 + ABID97_RS21055 0.62 -0.4 4,347,451 - ABID97_RS21055 0.62 -1.0 4,347,451 - ABID97_RS21055 0.62 +0.1 4,347,558 + ABID97_RS21055 0.77 -1.4 4,347,558 + ABID97_RS21055 0.77 -0.3 4,347,660 + -0.2 4,347,810 - ABID97_RS21060 0.28 +0.1 4,347,812 + ABID97_RS21060 0.29 -0.4 4,347,857 + ABID97_RS21060 0.45 -0.4 4,347,857 + ABID97_RS21060 0.45 +0.6 4,347,858 - ABID97_RS21060 0.45 -0.5 4,347,860 + ABID97_RS21060 0.46 -0.3 4,347,860 + ABID97_RS21060 0.46 +1.0 4,347,861 - ABID97_RS21060 0.46 -0.4 4,347,861 - ABID97_RS21060 0.46 -0.4 4,347,861 - ABID97_RS21060 0.46 -0.6 4,347,861 - ABID97_RS21060 0.46 -0.5
Or see this region's nucleotide sequence