Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04560 and ABID97_RS04565 are separated by 30 nucleotides ABID97_RS04565 and ABID97_RS04570 overlap by 4 nucleotides ABID97_RS04570 and ABID97_RS04575 are separated by 3 nucleotides
ABID97_RS04560: ABID97_RS04560 - NAD(P)/FAD-dependent oxidoreductase, at 948,629 to 950,107
_RS04560
ABID97_RS04565: ABID97_RS04565 - CMD domain protein, at 950,138 to 950,659
_RS04565
ABID97_RS04570: ABID97_RS04570 - peroxidase-related enzyme, at 950,656 to 951,246
_RS04570
ABID97_RS04575: ABID97_RS04575 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 951,250 to 952,329
_RS04575
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.042 kb on + strand at 950.043 kb on - strand at 950.267 kb on + strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.268 kb on - strand, within ABID97_RS04565 at 950.607 kb on + strand at 950.800 kb on + strand, within ABID97_RS04570 at 950.800 kb on + strand at 950.801 kb on - strand, within ABID97_RS04570 at 950.944 kb on + strand, within ABID97_RS04570 at 950.944 kb on + strand, within ABID97_RS04570 at 950.945 kb on - strand, within ABID97_RS04570 at 951.428 kb on + strand, within ABID97_RS04575 at 951.450 kb on - strand, within ABID97_RS04575 at 951.662 kb on + strand, within ABID97_RS04575 at 951.663 kb on - strand, within ABID97_RS04575 at 951.663 kb on - strand, within ABID97_RS04575 at 951.971 kb on + strand, within ABID97_RS04575 at 951.972 kb on - strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.978 kb on - strand, within ABID97_RS04575
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 950,042 + +0.6 950,043 - +0.0 950,267 + ABID97_RS04565 0.25 +0.7 950,268 - ABID97_RS04565 0.25 +0.3 950,268 - ABID97_RS04565 0.25 +0.4 950,268 - ABID97_RS04565 0.25 -0.1 950,607 + +0.7 950,800 + ABID97_RS04570 0.24 -0.3 950,800 + +2.4 950,801 - ABID97_RS04570 0.25 +0.2 950,944 + ABID97_RS04570 0.49 -0.6 950,944 + ABID97_RS04570 0.49 +0.4 950,945 - ABID97_RS04570 0.49 -0.5 951,428 + ABID97_RS04575 0.16 -0.2 951,450 - ABID97_RS04575 0.19 +0.0 951,662 + ABID97_RS04575 0.38 -2.2 951,663 - ABID97_RS04575 0.38 -0.2 951,663 - ABID97_RS04575 0.38 -1.3 951,971 + ABID97_RS04575 0.67 +0.2 951,972 - ABID97_RS04575 0.67 -0.0 951,977 + ABID97_RS04575 0.67 -0.4 951,977 + ABID97_RS04575 0.67 -0.3 951,977 + ABID97_RS04575 0.67 +0.0 951,978 - ABID97_RS04575 0.67 -0.1
Or see this region's nucleotide sequence