Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04490 and ABID97_RS04495 are separated by 183 nucleotides ABID97_RS04495 and ABID97_RS04500 are separated by 80 nucleotides ABID97_RS04500 and ABID97_RS04505 are separated by 41 nucleotides ABID97_RS04505 and ABID97_RS04510 are separated by 87 nucleotides
ABID97_RS04490: ABID97_RS04490 - ribosome-associated translation inhibitor RaiA, at 931,781 to 932,110
_RS04490
ABID97_RS04495: ABID97_RS04495 - PTS sugar transporter subunit IIA, at 932,294 to 932,761
_RS04495
ABID97_RS04500: ABID97_RS04500 - HPr(Ser) kinase/phosphatase, at 932,842 to 933,801
_RS04500
ABID97_RS04505: ABID97_RS04505 - ferric iron uptake transcriptional regulator, at 933,843 to 934,262
_RS04505
ABID97_RS04510: ABID97_RS04510 - outer membrane protein assembly factor BamE, at 934,350 to 934,913
_RS04510
Position (kb) 932
933
934 Strain fitness (log2 ratio) -2
-1
0
1 at 932.006 kb on + strand, within ABID97_RS04490 at 932.006 kb on + strand, within ABID97_RS04490 at 932.006 kb on + strand, within ABID97_RS04490 at 932.006 kb on + strand, within ABID97_RS04490 at 932.006 kb on + strand, within ABID97_RS04490 at 932.007 kb on - strand, within ABID97_RS04490 at 932.007 kb on - strand, within ABID97_RS04490 at 932.108 kb on + strand at 932.108 kb on + strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.109 kb on - strand at 932.233 kb on + strand at 932.270 kb on + strand at 932.270 kb on + strand at 932.270 kb on + strand at 932.271 kb on - strand at 932.837 kb on + strand at 932.838 kb on - strand at 933.001 kb on + strand, within ABID97_RS04500 at 933.001 kb on + strand, within ABID97_RS04500 at 933.002 kb on - strand, within ABID97_RS04500 at 933.002 kb on - strand, within ABID97_RS04500 at 933.049 kb on + strand, within ABID97_RS04500 at 933.877 kb on + strand at 933.877 kb on + strand at 933.878 kb on - strand at 933.878 kb on - strand at 933.958 kb on + strand, within ABID97_RS04505 at 934.027 kb on + strand, within ABID97_RS04505 at 934.027 kb on + strand, within ABID97_RS04505 at 934.028 kb on - strand, within ABID97_RS04505 at 934.099 kb on + strand, within ABID97_RS04505 at 934.235 kb on + strand at 934.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 932,006 + ABID97_RS04490 0.68 -0.2 932,006 + ABID97_RS04490 0.68 +0.3 932,006 + ABID97_RS04490 0.68 -0.4 932,006 + ABID97_RS04490 0.68 -0.6 932,006 + ABID97_RS04490 0.68 +0.1 932,007 - ABID97_RS04490 0.68 +0.3 932,007 - ABID97_RS04490 0.68 -0.8 932,108 + +0.1 932,108 + +0.7 932,109 - -0.4 932,109 - -0.3 932,109 - +0.2 932,109 - -0.1 932,109 - -1.0 932,109 - +1.2 932,109 - +0.2 932,233 + +1.4 932,270 + -1.0 932,270 + +0.7 932,270 + +0.8 932,271 - -0.6 932,837 + -0.2 932,838 - -2.6 933,001 + ABID97_RS04500 0.17 +0.4 933,001 + ABID97_RS04500 0.17 +0.8 933,002 - ABID97_RS04500 0.17 +0.4 933,002 - ABID97_RS04500 0.17 +0.4 933,049 + ABID97_RS04500 0.22 -1.7 933,877 + -0.2 933,877 + -0.7 933,878 - -0.8 933,878 - +0.4 933,958 + ABID97_RS04505 0.27 +0.4 934,027 + ABID97_RS04505 0.44 -0.1 934,027 + ABID97_RS04505 0.44 -0.2 934,028 - ABID97_RS04505 0.44 +0.4 934,099 + ABID97_RS04505 0.61 -0.4 934,235 + -0.8 934,313 - -0.3
Or see this region's nucleotide sequence