Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00720 and ABID97_RS00725 are separated by 66 nucleotides ABID97_RS00725 and ABID97_RS00730 are separated by 90 nucleotides ABID97_RS00730 and ABID97_RS00735 are separated by 247 nucleotides
ABID97_RS00720: ABID97_RS00720 - porphobilinogen synthase, at 143,475 to 144,464
_RS00720
ABID97_RS00725: ABID97_RS00725 - magnesium transporter CorA family protein, at 144,531 to 145,691
_RS00725
ABID97_RS00730: ABID97_RS00730 - DUF4148 domain-containing protein, at 145,782 to 146,150
_RS00730
ABID97_RS00735: ABID97_RS00735 - LysR family transcriptional regulator, at 146,398 to 147,303
_RS00735
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 144.462 kb on + strand at 144.462 kb on + strand at 144.462 kb on + strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.463 kb on - strand at 144.621 kb on + strand at 144.621 kb on + strand at 144.621 kb on + strand at 144.622 kb on - strand at 144.622 kb on - strand at 144.622 kb on - strand at 144.622 kb on - strand at 144.622 kb on - strand at 144.622 kb on - strand at 144.766 kb on - strand, within ABID97_RS00725 at 144.766 kb on - strand, within ABID97_RS00725 at 144.778 kb on - strand, within ABID97_RS00725 at 145.131 kb on + strand, within ABID97_RS00725 at 145.264 kb on + strand, within ABID97_RS00725 at 145.264 kb on + strand, within ABID97_RS00725 at 145.264 kb on + strand, within ABID97_RS00725 at 145.264 kb on + strand, within ABID97_RS00725 at 145.265 kb on - strand, within ABID97_RS00725 at 145.265 kb on - strand, within ABID97_RS00725 at 145.265 kb on - strand, within ABID97_RS00725 at 145.783 kb on + strand at 145.783 kb on + strand at 145.783 kb on + strand at 145.783 kb on + strand at 146.077 kb on + strand, within ABID97_RS00730 at 146.078 kb on - strand, within ABID97_RS00730 at 146.274 kb on + strand at 146.275 kb on - strand at 146.503 kb on + strand, within ABID97_RS00735 at 146.503 kb on + strand, within ABID97_RS00735 at 146.504 kb on - strand, within ABID97_RS00735
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 144,462 + +0.5 144,462 + -0.2 144,462 + -1.3 144,463 - +0.2 144,463 - -0.3 144,463 - +0.8 144,463 - +0.5 144,463 - -0.9 144,463 - -1.4 144,463 - +0.2 144,463 - -0.3 144,621 + +0.6 144,621 + +0.7 144,621 + +0.2 144,622 - +0.7 144,622 - -0.1 144,622 - -0.6 144,622 - +0.0 144,622 - -1.4 144,622 - -0.3 144,766 - ABID97_RS00725 0.20 -0.9 144,766 - ABID97_RS00725 0.20 +0.6 144,778 - ABID97_RS00725 0.21 -2.1 145,131 + ABID97_RS00725 0.52 -1.4 145,264 + ABID97_RS00725 0.63 -0.4 145,264 + ABID97_RS00725 0.63 -0.5 145,264 + ABID97_RS00725 0.63 +0.1 145,264 + ABID97_RS00725 0.63 -0.9 145,265 - ABID97_RS00725 0.63 -0.5 145,265 - ABID97_RS00725 0.63 -0.9 145,265 - ABID97_RS00725 0.63 +1.5 145,783 + +1.7 145,783 + +3.0 145,783 + -0.2 145,783 + -0.4 146,077 + ABID97_RS00730 0.80 -0.6 146,078 - ABID97_RS00730 0.80 -0.1 146,274 + -0.1 146,275 - +1.4 146,503 + ABID97_RS00735 0.12 +0.1 146,503 + ABID97_RS00735 0.12 -0.0 146,504 - ABID97_RS00735 0.12 -0.5
Or see this region's nucleotide sequence