Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00565 and ABID97_RS00570 overlap by 4 nucleotides ABID97_RS00570 and ABID97_RS00575 overlap by 32 nucleotides ABID97_RS00575 and ABID97_RS00580 are separated by 122 nucleotides ABID97_RS00580 and ABID97_RS00585 are separated by 109 nucleotides ABID97_RS00585 and ABID97_RS00590 are separated by 97 nucleotides
ABID97_RS00565: ABID97_RS00565 - phosphoenolpyruvate--protein phosphotransferase, at 120,164 to 121,957
_RS00565
ABID97_RS00570: ABID97_RS00570 - HPr family phosphocarrier protein, at 121,954 to 122,223
_RS00570
ABID97_RS00575: ABID97_RS00575 - PTS fructose transporter subunit IIA, at 122,192 to 122,647
_RS00575
ABID97_RS00580: ABID97_RS00580 - hypothetical protein, at 122,770 to 123,282
_RS00580
ABID97_RS00585: ABID97_RS00585 - TlpA disulfide reductase family protein, at 123,392 to 123,889
_RS00585
ABID97_RS00590: ABID97_RS00590 - cytochrome c, at 123,987 to 124,433
_RS00590
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.863 kb on + strand at 121.863 kb on + strand at 121.863 kb on + strand at 121.863 kb on + strand at 121.863 kb on + strand at 121.863 kb on + strand at 121.864 kb on - strand at 121.864 kb on - strand at 121.864 kb on - strand at 121.864 kb on - strand at 121.864 kb on - strand at 121.864 kb on - strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.917 kb on - strand at 122.138 kb on + strand, within ABID97_RS00570 at 122.139 kb on - strand, within ABID97_RS00570 at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.194 kb on - strand at 122.194 kb on - strand at 122.335 kb on - strand, within ABID97_RS00575 at 122.696 kb on + strand at 122.696 kb on + strand at 122.696 kb on + strand at 122.696 kb on + strand at 122.696 kb on + strand at 122.696 kb on + strand at 122.696 kb on + strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.697 kb on - strand at 122.700 kb on + strand at 122.701 kb on - strand at 122.709 kb on + strand at 122.709 kb on + strand at 122.709 kb on + strand at 122.709 kb on + strand at 122.710 kb on - strand at 122.710 kb on - strand at 122.710 kb on - strand at 122.847 kb on - strand, within ABID97_RS00580 at 123.361 kb on - strand at 123.402 kb on - strand at 123.452 kb on + strand, within ABID97_RS00585 at 123.452 kb on + strand, within ABID97_RS00585 at 123.452 kb on + strand, within ABID97_RS00585 at 123.452 kb on + strand, within ABID97_RS00585 at 123.453 kb on - strand, within ABID97_RS00585 at 123.614 kb on + strand, within ABID97_RS00585 at 123.615 kb on - strand, within ABID97_RS00585 at 123.615 kb on - strand, within ABID97_RS00585 at 123.623 kb on + strand, within ABID97_RS00585 at 123.624 kb on - strand, within ABID97_RS00585 at 123.639 kb on - strand, within ABID97_RS00585 at 123.639 kb on - strand, within ABID97_RS00585 at 123.639 kb on - strand, within ABID97_RS00585 at 123.665 kb on + strand, within ABID97_RS00585 at 123.665 kb on + strand, within ABID97_RS00585 at 123.666 kb on - strand, within ABID97_RS00585 at 123.666 kb on - strand, within ABID97_RS00585 at 123.666 kb on - strand, within ABID97_RS00585 at 123.666 kb on - strand, within ABID97_RS00585 at 123.680 kb on + strand, within ABID97_RS00585 at 123.680 kb on + strand, within ABID97_RS00585 at 123.681 kb on - strand, within ABID97_RS00585 at 123.681 kb on - strand, within ABID97_RS00585 at 123.681 kb on - strand, within ABID97_RS00585 at 123.681 kb on - strand, within ABID97_RS00585 at 123.681 kb on - strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.788 kb on + strand, within ABID97_RS00585 at 123.789 kb on - strand, within ABID97_RS00585 at 123.789 kb on - strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.824 kb on + strand, within ABID97_RS00585 at 123.825 kb on - strand, within ABID97_RS00585 at 123.825 kb on - strand, within ABID97_RS00585 at 123.825 kb on - strand, within ABID97_RS00585 at 123.825 kb on - strand, within ABID97_RS00585 at 123.825 kb on - strand, within ABID97_RS00585 at 123.988 kb on + strand at 123.988 kb on + strand at 123.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 121,863 + +1.8 121,863 + +1.6 121,863 + +0.9 121,863 + +1.3 121,863 + +1.3 121,863 + +1.1 121,864 - +1.2 121,864 - +1.1 121,864 - +1.1 121,864 - +0.8 121,864 - +1.4 121,864 - +1.5 121,916 + +1.8 121,916 + +1.7 121,916 + +0.3 121,917 - +1.2 122,138 + ABID97_RS00570 0.68 +0.8 122,139 - ABID97_RS00570 0.69 +1.4 122,193 + +0.6 122,193 + -0.2 122,193 + +1.1 122,193 + +2.4 122,193 + +1.5 122,193 + +1.6 122,193 + +2.4 122,193 + +1.5 122,194 - +0.4 122,194 - +1.1 122,335 - ABID97_RS00575 0.31 +0.4 122,696 + -0.6 122,696 + -0.3 122,696 + -0.3 122,696 + -0.1 122,696 + -0.2 122,696 + -1.2 122,696 + +0.0 122,697 - -0.5 122,697 - +0.0 122,697 - +0.2 122,697 - -0.3 122,697 - +0.8 122,697 - +0.1 122,697 - -0.6 122,697 - -0.7 122,700 + +0.4 122,701 - -0.3 122,709 + -0.2 122,709 + -0.0 122,709 + +0.3 122,709 + -0.2 122,710 - +0.2 122,710 - +1.1 122,710 - +0.8 122,847 - ABID97_RS00580 0.15 +0.3 123,361 - +0.2 123,402 - -0.0 123,452 + ABID97_RS00585 0.12 +0.4 123,452 + ABID97_RS00585 0.12 +0.0 123,452 + ABID97_RS00585 0.12 +0.1 123,452 + ABID97_RS00585 0.12 -1.2 123,453 - ABID97_RS00585 0.12 +0.2 123,614 + ABID97_RS00585 0.45 -1.8 123,615 - ABID97_RS00585 0.45 -0.3 123,615 - ABID97_RS00585 0.45 -0.9 123,623 + ABID97_RS00585 0.46 -0.7 123,624 - ABID97_RS00585 0.47 -0.9 123,639 - ABID97_RS00585 0.50 -0.6 123,639 - ABID97_RS00585 0.50 -0.3 123,639 - ABID97_RS00585 0.50 -1.2 123,665 + ABID97_RS00585 0.55 -0.3 123,665 + ABID97_RS00585 0.55 -1.2 123,666 - ABID97_RS00585 0.55 -0.1 123,666 - ABID97_RS00585 0.55 -0.3 123,666 - ABID97_RS00585 0.55 +0.5 123,666 - ABID97_RS00585 0.55 -1.1 123,680 + ABID97_RS00585 0.58 -1.0 123,680 + ABID97_RS00585 0.58 -0.4 123,681 - ABID97_RS00585 0.58 -0.4 123,681 - ABID97_RS00585 0.58 -1.0 123,681 - ABID97_RS00585 0.58 +1.1 123,681 - ABID97_RS00585 0.58 -0.5 123,681 - ABID97_RS00585 0.58 +0.5 123,788 + ABID97_RS00585 0.80 -0.4 123,788 + ABID97_RS00585 0.80 +0.9 123,788 + ABID97_RS00585 0.80 -1.4 123,788 + ABID97_RS00585 0.80 -0.3 123,788 + ABID97_RS00585 0.80 -1.3 123,788 + ABID97_RS00585 0.80 -1.0 123,789 - ABID97_RS00585 0.80 -0.9 123,789 - ABID97_RS00585 0.80 -0.4 123,824 + ABID97_RS00585 0.87 -0.9 123,824 + ABID97_RS00585 0.87 -1.6 123,824 + ABID97_RS00585 0.87 -0.9 123,824 + ABID97_RS00585 0.87 +0.8 123,824 + ABID97_RS00585 0.87 -0.7 123,824 + ABID97_RS00585 0.87 +0.8 123,824 + ABID97_RS00585 0.87 +0.1 123,825 - ABID97_RS00585 0.87 -0.4 123,825 - ABID97_RS00585 0.87 -0.8 123,825 - ABID97_RS00585 0.87 +1.4 123,825 - ABID97_RS00585 0.87 +0.3 123,825 - ABID97_RS00585 0.87 +0.1 123,988 + +1.6 123,988 + -0.1 123,989 - +0.3
Or see this region's nucleotide sequence