Strain Fitness in Escherichia coli BW25113 around b0131

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyadE and panD are separated by 3 nucleotidespanD and yadD are separated by 273 nucleotides b0130: yadE - predicted polysaccharide deacetylase lipoprotein (NCBI), at 145,081 to 146,310 yadE b0131: panD - aspartate 1-decarboxylase precursor (NCBI), at 146,314 to 146,694 panD b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870 yadD Position (kb) 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 145.325 kb on + strand, within yadEat 145.355 kb on + strand, within yadEat 145.362 kb on - strand, within yadEat 145.362 kb on - strand, within yadEat 145.518 kb on - strand, within yadEat 145.530 kb on + strand, within yadEat 145.549 kb on + strand, within yadEat 145.584 kb on - strand, within yadEat 145.584 kb on - strand, within yadEat 145.594 kb on + strand, within yadEat 145.594 kb on + strand, within yadEat 145.732 kb on - strand, within yadEat 145.810 kb on - strand, within yadEat 145.811 kb on - strand, within yadEat 145.873 kb on - strand, within yadEat 145.945 kb on - strand, within yadEat 145.945 kb on - strand, within yadEat 146.033 kb on + strand, within yadEat 146.034 kb on - strand, within yadEat 146.083 kb on + strand, within yadEat 146.142 kb on + strand, within yadEat 146.142 kb on + strand, within yadEat 146.153 kb on - strand, within yadEat 146.153 kb on - strand, within yadEat 146.275 kb on + strandat 146.275 kb on + strandat 146.277 kb on + strandat 146.277 kb on + strandat 146.461 kb on + strand, within panDat 146.513 kb on - strand, within panDat 146.602 kb on + strand, within panDat 146.627 kb on + strand, within panDat 146.632 kb on + strand, within panDat 146.791 kb on - strandat 146.901 kb on - strandat 146.901 kb on - strandat 146.917 kb on - strandat 146.964 kb on + strandat 146.979 kb on + strandat 146.979 kb on + strandat 146.982 kb on - strandat 146.985 kb on - strandat 147.127 kb on - strand, within yadDat 147.127 kb on - strand, within yadDat 147.127 kb on - strand, within yadDat 147.139 kb on - strand, within yadDat 147.154 kb on - strand, within yadDat 147.154 kb on - strand, within yadDat 147.164 kb on - strand, within yadDat 147.175 kb on - strand, within yadDat 147.268 kb on + strand, within yadDat 147.268 kb on + strand, within yadDat 147.278 kb on + strand, within yadDat 147.417 kb on - strand, within yadDat 147.436 kb on + strand, within yadDat 147.451 kb on - strand, within yadDat 147.466 kb on + strand, within yadDat 147.524 kb on + strand, within yadDat 147.524 kb on + strand, within yadDat 147.544 kb on - strand, within yadDat 147.558 kb on + strand, within yadDat 147.576 kb on - strand, within yadDat 147.631 kb on - strand, within yadDat 147.631 kb on - strand, within yadDat 147.663 kb on - strand, within yadDat 147.663 kb on - strand, within yadDat 147.665 kb on - strand, within yadDat 147.687 kb on - strand, within yadD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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145,325 + yadE b0130 0.20 -0.0
145,355 + yadE b0130 0.22 -0.1
145,362 - yadE b0130 0.23 -0.6
145,362 - yadE b0130 0.23 +0.1
145,518 - yadE b0130 0.36 -0.1
145,530 + yadE b0130 0.37 -0.1
145,549 + yadE b0130 0.38 -0.0
145,584 - yadE b0130 0.41 +0.6
145,584 - yadE b0130 0.41 +0.7
145,594 + yadE b0130 0.42 -0.7
145,594 + yadE b0130 0.42 -0.6
145,732 - yadE b0130 0.53 +0.1
145,810 - yadE b0130 0.59 -0.5
145,811 - yadE b0130 0.59 -0.2
145,873 - yadE b0130 0.64 +1.3
145,945 - yadE b0130 0.70 -1.2
145,945 - yadE b0130 0.70 -0.2
146,033 + yadE b0130 0.77 +0.7
146,034 - yadE b0130 0.77 -0.4
146,083 + yadE b0130 0.81 +1.0
146,142 + yadE b0130 0.86 +0.7
146,142 + yadE b0130 0.86 -0.3
146,153 - yadE b0130 0.87 -1.1
146,153 - yadE b0130 0.87 -0.3
146,275 + +0.4
146,275 + +0.5
146,277 + -0.4
146,277 + +0.5
146,461 + panD b0131 0.39 -0.9
146,513 - panD b0131 0.52 -1.0
146,602 + panD b0131 0.76 -0.0
146,627 + panD b0131 0.82 -1.6
146,632 + panD b0131 0.83 -0.6
146,791 - +0.1
146,901 - +2.4
146,901 - +0.9
146,917 - +0.2
146,964 + -0.4
146,979 + -1.1
146,979 + -1.9
146,982 - +0.1
146,985 - -0.4
147,127 - yadD b0132 0.18 -0.1
147,127 - yadD b0132 0.18 -0.0
147,127 - yadD b0132 0.18 -0.4
147,139 - yadD b0132 0.19 +0.2
147,154 - yadD b0132 0.21 -0.0
147,154 - yadD b0132 0.21 +0.9
147,164 - yadD b0132 0.22 -1.0
147,175 - yadD b0132 0.23 +0.3
147,268 + yadD b0132 0.33 +0.8
147,268 + yadD b0132 0.33 +1.2
147,278 + yadD b0132 0.34 +0.6
147,417 - yadD b0132 0.50 +0.1
147,436 + yadD b0132 0.52 +0.2
147,451 - yadD b0132 0.53 +0.5
147,466 + yadD b0132 0.55 +0.1
147,524 + yadD b0132 0.62 -1.2
147,524 + yadD b0132 0.62 +0.1
147,544 - yadD b0132 0.64 -0.5
147,558 + yadD b0132 0.65 +0.5
147,576 - yadD b0132 0.67 -0.0
147,631 - yadD b0132 0.73 -0.8
147,631 - yadD b0132 0.73 +0.4
147,663 - yadD b0132 0.77 -0.3
147,663 - yadD b0132 0.77 -0.3
147,665 - yadD b0132 0.77 +0.3
147,687 - yadD b0132 0.80 +0.0

Or see this region's nucleotide sequence