Experiment: KB with Dimethyl Sulfoxide 0.42 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3540 and Psyr_3541 are separated by 64 nucleotides Psyr_3541 and Psyr_3542 are separated by 80 nucleotides
Psyr_3540: Psyr_3540 - Zinc-containing alcohol dehydrogenase superfamily, at 4,217,886 to 4,218,887
_3540
Psyr_3541: Psyr_3541 - Short-chain dehydrogenase/reductase SDR, at 4,218,952 to 4,219,764
_3541
Psyr_3542: Psyr_3542 - Short-chain dehydrogenase/reductase SDR, at 4,219,845 to 4,220,594
_3542
Position (kb) 4218
4219
4220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4218.027 kb on - strand, within Psyr_3540 at 4218.061 kb on + strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.583 kb on + strand, within Psyr_3540 at 4218.584 kb on - strand, within Psyr_3540 at 4218.653 kb on - strand, within Psyr_3540 at 4218.782 kb on - strand, within Psyr_3540 at 4218.885 kb on + strand at 4218.885 kb on + strand at 4218.885 kb on + strand at 4218.886 kb on - strand at 4218.894 kb on - strand at 4218.897 kb on - strand at 4219.043 kb on - strand, within Psyr_3541 at 4219.384 kb on + strand, within Psyr_3541 at 4219.384 kb on + strand, within Psyr_3541 at 4219.414 kb on + strand, within Psyr_3541 at 4219.415 kb on - strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.538 kb on - strand, within Psyr_3541 at 4219.697 kb on + strand at 4219.762 kb on + strand at 4219.762 kb on + strand at 4219.762 kb on + strand at 4219.763 kb on - strand at 4219.789 kb on + strand at 4219.790 kb on - strand at 4219.944 kb on - strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.999 kb on - strand, within Psyr_3542 at 4219.999 kb on - strand, within Psyr_3542 at 4220.112 kb on - strand, within Psyr_3542 at 4220.183 kb on + strand, within Psyr_3542 at 4220.184 kb on - strand, within Psyr_3542 at 4220.184 kb on - strand, within Psyr_3542 at 4220.353 kb on + strand, within Psyr_3542 at 4220.383 kb on - strand, within Psyr_3542 at 4220.488 kb on + strand, within Psyr_3542 at 4220.489 kb on - strand, within Psyr_3542 at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.574 kb on + strand at 4220.621 kb on + strand at 4220.622 kb on - strand at 4220.622 kb on - strand at 4220.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 0.42 vol% remove 4,218,027 - Psyr_3540 0.14 +1.0 4,218,061 + Psyr_3540 0.17 +1.6 4,218,276 - Psyr_3540 0.39 -0.1 4,218,276 - Psyr_3540 0.39 +0.0 4,218,276 - Psyr_3540 0.39 -0.2 4,218,583 + Psyr_3540 0.70 +0.5 4,218,584 - Psyr_3540 0.70 +0.4 4,218,653 - Psyr_3540 0.77 +0.2 4,218,782 - Psyr_3540 0.89 -0.7 4,218,885 + +1.2 4,218,885 + -0.8 4,218,885 + -0.0 4,218,886 - -0.4 4,218,894 - +0.9 4,218,897 - -0.3 4,219,043 - Psyr_3541 0.11 +0.9 4,219,384 + Psyr_3541 0.53 +0.1 4,219,384 + Psyr_3541 0.53 -1.0 4,219,414 + Psyr_3541 0.57 -0.7 4,219,415 - Psyr_3541 0.57 +2.4 4,219,484 + Psyr_3541 0.65 +0.5 4,219,484 + Psyr_3541 0.65 +1.0 4,219,484 + Psyr_3541 0.65 -0.1 4,219,484 + Psyr_3541 0.65 +1.5 4,219,485 - Psyr_3541 0.66 +1.9 4,219,485 - Psyr_3541 0.66 +0.5 4,219,485 - Psyr_3541 0.66 +0.5 4,219,485 - Psyr_3541 0.66 -0.5 4,219,538 - Psyr_3541 0.72 +0.2 4,219,697 + +0.3 4,219,762 + -1.1 4,219,762 + +0.5 4,219,762 + -0.9 4,219,763 - +0.6 4,219,789 + -0.5 4,219,790 - +0.2 4,219,944 - Psyr_3542 0.13 +0.4 4,219,998 + Psyr_3542 0.20 -0.1 4,219,998 + Psyr_3542 0.20 -0.6 4,219,998 + Psyr_3542 0.20 -1.6 4,219,999 - Psyr_3542 0.21 +0.5 4,219,999 - Psyr_3542 0.21 -1.4 4,220,112 - Psyr_3542 0.36 +0.4 4,220,183 + Psyr_3542 0.45 -0.2 4,220,184 - Psyr_3542 0.45 -2.7 4,220,184 - Psyr_3542 0.45 -0.0 4,220,353 + Psyr_3542 0.68 -1.4 4,220,383 - Psyr_3542 0.72 +1.5 4,220,488 + Psyr_3542 0.86 -0.2 4,220,489 - Psyr_3542 0.86 -0.1 4,220,544 + -0.1 4,220,544 + +0.6 4,220,544 + +0.2 4,220,544 + -0.5 4,220,545 - -0.2 4,220,545 - -1.6 4,220,545 - -0.5 4,220,545 - +0.6 4,220,574 + +1.1 4,220,621 + +0.1 4,220,622 - +1.4 4,220,622 - -0.1 4,220,622 - +1.3
Or see this region's nucleotide sequence