Experiment: KB with Dimethyl Sulfoxide 0.42 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0713 and Psyr_0714 are separated by 6 nucleotides Psyr_0714 and Psyr_0715 are separated by 131 nucleotides Psyr_0715 and Psyr_0716 overlap by 1 nucleotides Psyr_0716 and Psyr_0717 overlap by 4 nucleotides
Psyr_0713: Psyr_0713 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 817,378 to 818,325
_0713
Psyr_0714: Psyr_0714 - type IV pilus biogenesis protein, at 818,332 to 818,832
_0714
Psyr_0715: Psyr_0715 - pillin, putative, at 818,964 to 819,437
_0715
Psyr_0716: Psyr_0716 - type IV pilus assembly protein PilV, at 819,437 to 819,952
_0716
Psyr_0717: Psyr_0717 - type IV pilus assembly protein PilW, at 819,949 to 820,656
_0717
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.329 kb on + strand at 818.395 kb on + strand, within Psyr_0714 at 818.406 kb on - strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.434 kb on + strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.435 kb on - strand, within Psyr_0714 at 818.535 kb on + strand, within Psyr_0714 at 818.536 kb on - strand, within Psyr_0714 at 818.548 kb on + strand, within Psyr_0714 at 818.548 kb on + strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.596 kb on + strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.801 kb on - strand at 818.801 kb on - strand at 818.832 kb on + strand at 818.833 kb on - strand at 818.833 kb on - strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.899 kb on - strand at 818.936 kb on + strand at 818.936 kb on + strand at 818.937 kb on - strand at 818.937 kb on - strand at 818.937 kb on - strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.944 kb on + strand at 818.944 kb on + strand at 818.945 kb on - strand at 818.952 kb on - strand at 818.972 kb on + strand at 818.972 kb on + strand at 818.972 kb on + strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.974 kb on + strand at 818.975 kb on - strand at 818.975 kb on - strand at 818.975 kb on - strand at 818.975 kb on - strand at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.161 kb on + strand, within Psyr_0715 at 819.161 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.291 kb on - strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.391 kb on + strand at 819.391 kb on + strand at 819.391 kb on + strand at 819.392 kb on - strand at 819.557 kb on + strand, within Psyr_0716 at 819.557 kb on + strand, within Psyr_0716 at 819.557 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.641 kb on - strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.670 kb on - strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.677 kb on - strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.872 kb on - strand, within Psyr_0716 at 820.037 kb on + strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.060 kb on + strand, within Psyr_0717 at 820.060 kb on + strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.171 kb on - strand, within Psyr_0717 at 820.171 kb on - strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.290 kb on + strand, within Psyr_0717 at 820.340 kb on - strand, within Psyr_0717 at 820.399 kb on + strand, within Psyr_0717 at 820.433 kb on - strand, within Psyr_0717 at 820.433 kb on - strand, within Psyr_0717
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 0.42 vol% remove 818,329 + +1.1 818,395 + Psyr_0714 0.13 -0.2 818,406 - Psyr_0714 0.15 -0.7 818,434 + Psyr_0714 0.20 +2.6 818,434 + Psyr_0714 0.20 -0.4 818,434 + Psyr_0714 0.20 +0.1 818,434 + Psyr_0714 0.20 +0.1 818,434 + Psyr_0714 0.20 -0.1 818,434 + Psyr_0714 0.20 +1.0 818,434 + Psyr_0714 0.20 -2.9 818,434 + Psyr_0714 0.20 +0.4 818,434 + Psyr_0714 0.20 -0.4 818,434 + Psyr_0714 0.20 +0.8 818,434 + Psyr_0714 0.20 -0.7 818,434 + Psyr_0714 0.20 -1.3 818,435 - Psyr_0714 0.21 -2.2 818,435 - Psyr_0714 0.21 +1.1 818,435 - Psyr_0714 0.21 +0.3 818,435 - Psyr_0714 0.21 +0.3 818,435 - Psyr_0714 0.21 -0.4 818,435 - Psyr_0714 0.21 +0.3 818,435 - Psyr_0714 0.21 -2.0 818,435 - Psyr_0714 0.21 +0.6 818,435 - Psyr_0714 0.21 -1.6 818,435 - Psyr_0714 0.21 -0.4 818,435 - Psyr_0714 0.21 +0.3 818,435 - Psyr_0714 0.21 -1.0 818,435 - Psyr_0714 0.21 +0.4 818,535 + Psyr_0714 0.41 +0.0 818,536 - Psyr_0714 0.41 +0.5 818,548 + Psyr_0714 0.43 +0.9 818,548 + Psyr_0714 0.43 +1.1 818,549 - Psyr_0714 0.43 -0.0 818,549 - Psyr_0714 0.43 +0.3 818,596 + Psyr_0714 0.53 +0.6 818,597 - Psyr_0714 0.53 +0.2 818,801 - -0.7 818,801 - +0.6 818,832 + +0.9 818,833 - +0.8 818,833 - -0.2 818,898 + -0.1 818,898 + -0.2 818,898 + -0.2 818,899 - -0.2 818,936 + -1.4 818,936 + -1.0 818,937 - -0.2 818,937 - +1.0 818,937 - +1.8 818,938 + +0.4 818,938 + -0.9 818,938 + +0.8 818,938 + +0.5 818,939 - -0.6 818,939 - +0.0 818,939 - +0.7 818,939 - -1.0 818,939 - +1.1 818,939 - +0.4 818,944 + -0.4 818,944 + +0.6 818,945 - +0.3 818,952 - +1.0 818,972 + +0.2 818,972 + +0.4 818,972 + +0.7 818,973 - -0.6 818,973 - +1.0 818,973 - -0.9 818,973 - -1.0 818,973 - +0.6 818,974 + +0.0 818,975 - +0.5 818,975 - +0.6 818,975 - +0.0 818,975 - +1.4 819,120 + Psyr_0715 0.33 +0.0 819,120 + Psyr_0715 0.33 +0.5 819,120 + Psyr_0715 0.33 +0.4 819,120 + Psyr_0715 0.33 -0.2 819,120 + Psyr_0715 0.33 -0.3 819,120 + Psyr_0715 0.33 +0.2 819,121 - Psyr_0715 0.33 -0.6 819,121 - Psyr_0715 0.33 -0.8 819,121 - Psyr_0715 0.33 +0.0 819,121 - Psyr_0715 0.33 +0.8 819,121 - Psyr_0715 0.33 +0.2 819,121 - Psyr_0715 0.33 -0.1 819,161 + Psyr_0715 0.42 +0.4 819,161 + Psyr_0715 0.42 +1.0 819,207 + Psyr_0715 0.51 -0.0 819,207 + Psyr_0715 0.51 +0.3 819,207 + Psyr_0715 0.51 +0.3 819,207 + Psyr_0715 0.51 +1.2 819,208 - Psyr_0715 0.51 +1.8 819,208 - Psyr_0715 0.51 +0.2 819,208 - Psyr_0715 0.51 +0.4 819,208 - Psyr_0715 0.51 -0.4 819,291 - Psyr_0715 0.69 -0.6 819,363 + Psyr_0715 0.84 -0.5 819,363 + Psyr_0715 0.84 -0.5 819,363 + Psyr_0715 0.84 -0.1 819,363 + Psyr_0715 0.84 -2.3 819,363 + Psyr_0715 0.84 +0.3 819,363 + Psyr_0715 0.84 -0.7 819,363 + Psyr_0715 0.84 +1.3 819,364 - Psyr_0715 0.84 -0.2 819,364 - Psyr_0715 0.84 +1.0 819,364 - Psyr_0715 0.84 +0.8 819,364 - Psyr_0715 0.84 +0.2 819,364 - Psyr_0715 0.84 +0.9 819,364 - Psyr_0715 0.84 +0.8 819,391 + +0.3 819,391 + +1.4 819,391 + +0.2 819,392 - -0.2 819,557 + Psyr_0716 0.23 -0.3 819,557 + Psyr_0716 0.23 +0.5 819,557 + Psyr_0716 0.23 -0.3 819,640 + Psyr_0716 0.39 +0.8 819,640 + Psyr_0716 0.39 +0.0 819,641 - Psyr_0716 0.40 -0.5 819,669 + Psyr_0716 0.45 +0.7 819,669 + Psyr_0716 0.45 +0.2 819,670 - Psyr_0716 0.45 +0.6 819,676 + Psyr_0716 0.46 -0.5 819,676 + Psyr_0716 0.46 -1.2 819,677 - Psyr_0716 0.47 +1.5 819,680 + Psyr_0716 0.47 -0.3 819,680 + Psyr_0716 0.47 +1.1 819,682 + Psyr_0716 0.47 +0.8 819,682 + Psyr_0716 0.47 +0.0 819,683 - Psyr_0716 0.48 -1.1 819,683 - Psyr_0716 0.48 -1.3 819,683 - Psyr_0716 0.48 +0.4 819,817 + Psyr_0716 0.74 -0.1 819,817 + Psyr_0716 0.74 -0.4 819,817 + Psyr_0716 0.74 +2.0 819,817 + Psyr_0716 0.74 -0.4 819,818 - Psyr_0716 0.74 +0.4 819,818 - Psyr_0716 0.74 +0.1 819,818 - Psyr_0716 0.74 +0.2 819,872 - Psyr_0716 0.84 +0.8 820,037 + Psyr_0717 0.12 -0.1 820,038 - Psyr_0717 0.13 +0.1 820,038 - Psyr_0717 0.13 +0.1 820,038 - Psyr_0717 0.13 +2.6 820,038 - Psyr_0717 0.13 +0.3 820,060 + Psyr_0717 0.16 -1.0 820,060 + Psyr_0717 0.16 -0.6 820,061 - Psyr_0717 0.16 -1.2 820,061 - Psyr_0717 0.16 -3.0 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +0.8 820,150 + Psyr_0717 0.28 +2.0 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 +0.3 820,150 + Psyr_0717 0.28 -0.1 820,150 + Psyr_0717 0.28 -1.8 820,150 + Psyr_0717 0.28 +1.0 820,150 + Psyr_0717 0.28 +0.0 820,150 + Psyr_0717 0.28 -0.4 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +1.4 820,151 - Psyr_0717 0.29 +1.1 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 -0.2 820,151 - Psyr_0717 0.29 -0.2 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 +0.4 820,151 - Psyr_0717 0.29 +0.4 820,151 - Psyr_0717 0.29 -1.0 820,151 - Psyr_0717 0.29 +0.7 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 +0.3 820,151 - Psyr_0717 0.29 +0.6 820,151 - Psyr_0717 0.29 -1.2 820,151 - Psyr_0717 0.29 +0.1 820,151 - Psyr_0717 0.29 +2.0 820,151 - Psyr_0717 0.29 -1.0 820,171 - Psyr_0717 0.31 +0.3 820,171 - Psyr_0717 0.31 -0.3 820,174 + Psyr_0717 0.32 -0.7 820,174 + Psyr_0717 0.32 +0.1 820,174 + Psyr_0717 0.32 -2.0 820,174 + Psyr_0717 0.32 +0.0 820,174 + Psyr_0717 0.32 -1.2 820,174 + Psyr_0717 0.32 +0.3 820,175 - Psyr_0717 0.32 +0.0 820,175 - Psyr_0717 0.32 +0.4 820,175 - Psyr_0717 0.32 -0.4 820,175 - Psyr_0717 0.32 -0.6 820,184 + Psyr_0717 0.33 -0.4 820,184 + Psyr_0717 0.33 +0.1 820,290 + Psyr_0717 0.48 -2.2 820,340 - Psyr_0717 0.55 +0.0 820,399 + Psyr_0717 0.64 +0.2 820,433 - Psyr_0717 0.68 -0.1 820,433 - Psyr_0717 0.68 +0.4
Or see this region's nucleotide sequence