Experiment: KB with Dimethyl Sulfoxide 0.42 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0391 and Psyr_0392 are separated by 112 nucleotides Psyr_0392 and Psyr_0393 overlap by 17 nucleotides Psyr_0393 and Psyr_0394 are separated by 107 nucleotides
Psyr_0391: Psyr_0391 - Poly granule associated, at 419,054 to 419,746
_0391
Psyr_0392: Psyr_0392 - hypothetical protein, at 419,859 to 420,164
_0392
Psyr_0393: Psyr_0393 - Protein of unknown function DUF971, at 420,148 to 420,519
_0393
Psyr_0394: Psyr_0394 - Heat shock protein HslU, at 420,627 to 421,964
_0394
Position (kb) 420
421 Strain fitness (log2 ratio) -2
-1
0
1 at 419.292 kb on + strand, within Psyr_0391 at 419.403 kb on + strand, within Psyr_0391 at 419.404 kb on - strand, within Psyr_0391 at 419.452 kb on - strand, within Psyr_0391 at 419.747 kb on + strand at 419.747 kb on + strand at 419.747 kb on + strand at 419.748 kb on - strand at 419.748 kb on - strand at 419.748 kb on - strand at 419.769 kb on + strand at 419.769 kb on + strand at 419.769 kb on + strand at 419.769 kb on + strand at 419.769 kb on + strand at 419.770 kb on - strand at 419.770 kb on - strand at 419.868 kb on + strand at 419.868 kb on + strand at 419.868 kb on + strand at 419.868 kb on + strand at 419.868 kb on + strand at 419.869 kb on - strand at 419.945 kb on + strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.019 kb on - strand, within Psyr_0392 at 420.019 kb on - strand, within Psyr_0392 at 420.218 kb on + strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.273 kb on + strand, within Psyr_0393 at 420.446 kb on + strand, within Psyr_0393 at 420.447 kb on - strand, within Psyr_0393 at 420.612 kb on + strand at 420.612 kb on + strand at 420.612 kb on + strand at 420.612 kb on + strand at 420.612 kb on + strand at 420.613 kb on - strand at 420.613 kb on - strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.680 kb on + strand at 420.688 kb on + strand at 420.689 kb on - strand at 421.068 kb on - strand, within Psyr_0394 at 421.068 kb on - strand, within Psyr_0394 at 421.296 kb on + strand, within Psyr_0394
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 0.42 vol% remove 419,292 + Psyr_0391 0.34 -0.2 419,403 + Psyr_0391 0.50 +0.2 419,404 - Psyr_0391 0.51 -0.4 419,452 - Psyr_0391 0.57 -2.2 419,747 + +0.8 419,747 + +0.9 419,747 + -0.0 419,748 - -0.1 419,748 - -0.5 419,748 - +0.2 419,769 + -0.2 419,769 + +0.9 419,769 + +0.2 419,769 + -0.2 419,769 + +1.3 419,770 - +0.3 419,770 - -1.4 419,868 + +0.4 419,868 + +0.4 419,868 + +0.4 419,868 + -0.3 419,868 + +0.3 419,869 - +0.5 419,945 + Psyr_0392 0.28 +0.0 419,989 - Psyr_0392 0.42 +1.0 419,989 - Psyr_0392 0.42 +0.7 419,989 - Psyr_0392 0.42 +0.6 419,989 - Psyr_0392 0.42 -0.6 419,989 - Psyr_0392 0.42 +0.5 420,018 + Psyr_0392 0.52 +0.2 420,018 + Psyr_0392 0.52 -1.5 420,018 + Psyr_0392 0.52 -0.3 420,018 + Psyr_0392 0.52 -0.1 420,018 + Psyr_0392 0.52 +1.2 420,018 + Psyr_0392 0.52 +0.4 420,018 + Psyr_0392 0.52 +0.2 420,019 - Psyr_0392 0.52 -0.8 420,019 - Psyr_0392 0.52 +1.6 420,218 + Psyr_0393 0.19 -1.0 420,264 - Psyr_0393 0.31 -1.3 420,264 - Psyr_0393 0.31 -0.3 420,264 - Psyr_0393 0.31 -1.2 420,273 + Psyr_0393 0.34 -0.5 420,446 + Psyr_0393 0.80 -0.4 420,447 - Psyr_0393 0.80 -0.8 420,612 + +0.3 420,612 + -1.3 420,612 + +0.7 420,612 + -0.3 420,612 + +0.2 420,613 - -0.5 420,613 - -0.7 420,615 + -0.9 420,615 + -1.3 420,615 + +0.6 420,615 + -0.0 420,615 + -0.2 420,615 + -0.3 420,616 - -0.1 420,616 - +0.8 420,616 - +0.3 420,616 - -0.1 420,616 - +0.1 420,635 + -0.9 420,635 + -0.1 420,635 + -1.1 420,635 + -1.3 420,636 - -1.1 420,636 - +0.8 420,636 - +0.4 420,636 - -1.2 420,636 - -0.8 420,680 + +0.2 420,688 + +0.3 420,689 - -1.3 421,068 - Psyr_0394 0.33 -0.4 421,068 - Psyr_0394 0.33 +0.8 421,296 + Psyr_0394 0.50 +1.2
Or see this region's nucleotide sequence