Experiment: Sorgoleone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_16620 and OH686_16625 are separated by 3 nucleotides OH686_16625 and OH686_16630 are separated by 7 nucleotides OH686_16630 and OH686_16635 are separated by 113 nucleotides
OH686_16620: OH686_16620 - ATP-dependent RNA helicase, at 3,475,984 to 3,477,333
_16620
OH686_16625: OH686_16625 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 3,477,337 to 3,477,780
_16625
OH686_16630: OH686_16630 - Chemotaxis protein CheC -- inhibitor of MCP methylation, at 3,477,788 to 3,478,786
_16630
OH686_16635: OH686_16635 - hypothetical protein, at 3,478,900 to 3,480,621
_16635
Position (kb)
3477
3478
3479 Strain fitness (log2 ratio)
-2
-1
0
1 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.965 kb on + strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3476.966 kb on - strand, within OH686_16620 at 3477.153 kb on - strand, within OH686_16620 at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.380 kb on + strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.381 kb on - strand at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.394 kb on + strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.395 kb on - strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.449 kb on + strand, within OH686_16625 at 3477.450 kb on - strand, within OH686_16625 at 3477.450 kb on - strand, within OH686_16625 at 3477.503 kb on + strand, within OH686_16625 at 3477.503 kb on + strand, within OH686_16625 at 3477.504 kb on - strand, within OH686_16625 at 3477.801 kb on + strand at 3477.801 kb on + strand at 3477.801 kb on + strand at 3477.802 kb on - strand at 3477.802 kb on - strand at 3477.888 kb on + strand, within OH686_16630 at 3477.888 kb on + strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3477.889 kb on - strand, within OH686_16630 at 3478.444 kb on + strand, within OH686_16630 at 3478.444 kb on + strand, within OH686_16630 at 3478.593 kb on - strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.625 kb on + strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.626 kb on - strand, within OH686_16630 at 3478.700 kb on - strand at 3478.735 kb on + strand at 3478.803 kb on + strand at 3478.804 kb on - strand at 3478.804 kb on - strand at 3478.821 kb on + strand at 3478.821 kb on + strand at 3478.821 kb on + strand at 3478.821 kb on + strand at 3478.821 kb on + strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.822 kb on - strand at 3478.880 kb on + strand at 3478.881 kb on - strand at 3478.881 kb on - strand at 3478.922 kb on + strand at 3478.922 kb on + strand at 3478.922 kb on + strand at 3478.922 kb on + strand at 3478.922 kb on + strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.923 kb on - strand at 3478.928 kb on + strand at 3478.928 kb on + strand at 3478.928 kb on + strand at 3478.928 kb on + strand at 3478.928 kb on + strand at 3478.928 kb on + strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.929 kb on - strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.958 kb on + strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3478.959 kb on - strand at 3479.062 kb on + strand at 3479.062 kb on + strand at 3479.063 kb on - strand at 3479.725 kb on - strand, within OH686_16635
Per-strain Table
Position Strand Gene LocusTag Fraction Sorgoleone (C) remove 3,476,965 + OH686_16620 0.73 -0.3 3,476,965 + OH686_16620 0.73 +0.6 3,476,965 + OH686_16620 0.73 +0.4 3,476,965 + OH686_16620 0.73 +0.1 3,476,965 + OH686_16620 0.73 -0.4 3,476,965 + OH686_16620 0.73 -0.1 3,476,965 + OH686_16620 0.73 -0.9 3,476,965 + OH686_16620 0.73 +0.7 3,476,965 + OH686_16620 0.73 +0.5 3,476,965 + OH686_16620 0.73 +0.0 3,476,965 + OH686_16620 0.73 -1.2 3,476,966 - OH686_16620 0.73 +0.8 3,476,966 - OH686_16620 0.73 -0.1 3,476,966 - OH686_16620 0.73 -0.3 3,476,966 - OH686_16620 0.73 -0.3 3,476,966 - OH686_16620 0.73 +0.5 3,476,966 - OH686_16620 0.73 -0.1 3,476,966 - OH686_16620 0.73 +0.5 3,476,966 - OH686_16620 0.73 -0.2 3,476,966 - OH686_16620 0.73 +0.2 3,476,966 - OH686_16620 0.73 -0.3 3,476,966 - OH686_16620 0.73 -1.5 3,476,966 - OH686_16620 0.73 -0.1 3,476,966 - OH686_16620 0.73 +0.3 3,477,153 - OH686_16620 0.87 +0.0 3,477,380 + -1.3 3,477,380 + -0.1 3,477,380 + +0.1 3,477,380 + +0.9 3,477,380 + -0.5 3,477,381 - -0.0 3,477,381 - -0.2 3,477,381 - +0.4 3,477,381 - +0.4 3,477,394 + OH686_16625 0.13 +0.1 3,477,394 + OH686_16625 0.13 -0.2 3,477,394 + OH686_16625 0.13 -0.2 3,477,394 + OH686_16625 0.13 +0.3 3,477,394 + OH686_16625 0.13 +0.1 3,477,394 + OH686_16625 0.13 +0.4 3,477,394 + OH686_16625 0.13 +0.6 3,477,394 + OH686_16625 0.13 +0.1 3,477,394 + OH686_16625 0.13 -0.2 3,477,394 + OH686_16625 0.13 -0.8 3,477,394 + OH686_16625 0.13 -0.5 3,477,394 + OH686_16625 0.13 -1.9 3,477,394 + OH686_16625 0.13 -0.9 3,477,394 + OH686_16625 0.13 -0.2 3,477,394 + OH686_16625 0.13 +0.0 3,477,394 + OH686_16625 0.13 +0.4 3,477,394 + OH686_16625 0.13 -1.3 3,477,394 + OH686_16625 0.13 -1.2 3,477,395 - OH686_16625 0.13 +0.4 3,477,395 - OH686_16625 0.13 +0.2 3,477,395 - OH686_16625 0.13 +0.5 3,477,395 - OH686_16625 0.13 +0.4 3,477,395 - OH686_16625 0.13 -0.7 3,477,395 - OH686_16625 0.13 -0.6 3,477,395 - OH686_16625 0.13 +0.1 3,477,395 - OH686_16625 0.13 +1.5 3,477,395 - OH686_16625 0.13 +0.2 3,477,449 + OH686_16625 0.25 +0.9 3,477,449 + OH686_16625 0.25 +0.8 3,477,449 + OH686_16625 0.25 -0.1 3,477,449 + OH686_16625 0.25 -0.5 3,477,450 - OH686_16625 0.25 -1.0 3,477,450 - OH686_16625 0.25 -0.4 3,477,503 + OH686_16625 0.37 -0.5 3,477,503 + OH686_16625 0.37 +0.7 3,477,504 - OH686_16625 0.38 +1.6 3,477,801 + +0.4 3,477,801 + -1.0 3,477,801 + +0.2 3,477,802 - -0.9 3,477,802 - -0.2 3,477,888 + OH686_16630 0.10 +0.1 3,477,888 + OH686_16630 0.10 -1.4 3,477,889 - OH686_16630 0.10 +1.5 3,477,889 - OH686_16630 0.10 +0.2 3,477,889 - OH686_16630 0.10 -0.0 3,477,889 - OH686_16630 0.10 -0.1 3,477,889 - OH686_16630 0.10 -0.3 3,478,444 + OH686_16630 0.66 +0.1 3,478,444 + OH686_16630 0.66 -1.4 3,478,593 - OH686_16630 0.81 +0.8 3,478,625 + OH686_16630 0.84 +0.2 3,478,625 + OH686_16630 0.84 +0.1 3,478,625 + OH686_16630 0.84 -0.3 3,478,625 + OH686_16630 0.84 -0.1 3,478,625 + OH686_16630 0.84 -0.3 3,478,625 + OH686_16630 0.84 +0.9 3,478,625 + OH686_16630 0.84 +0.9 3,478,625 + OH686_16630 0.84 -0.5 3,478,626 - OH686_16630 0.84 +1.2 3,478,626 - OH686_16630 0.84 +0.7 3,478,626 - OH686_16630 0.84 +0.2 3,478,626 - OH686_16630 0.84 -0.1 3,478,626 - OH686_16630 0.84 +0.8 3,478,700 - +0.2 3,478,735 + +1.0 3,478,803 + -1.8 3,478,804 - +0.1 3,478,804 - +0.1 3,478,821 + +0.7 3,478,821 + -1.2 3,478,821 + +0.5 3,478,821 + -0.0 3,478,821 + -1.0 3,478,822 - -0.1 3,478,822 - -1.5 3,478,822 - -0.7 3,478,822 - -0.9 3,478,822 - +0.5 3,478,822 - +1.5 3,478,822 - +1.2 3,478,822 - -0.6 3,478,822 - -0.8 3,478,822 - +0.2 3,478,822 - +0.2 3,478,880 + +0.2 3,478,881 - +0.4 3,478,881 - +0.6 3,478,922 + +1.1 3,478,922 + -0.3 3,478,922 + -0.1 3,478,922 + -0.2 3,478,922 + -0.1 3,478,923 - +1.0 3,478,923 - +1.0 3,478,923 - +0.4 3,478,923 - +1.5 3,478,923 - +0.1 3,478,923 - -0.2 3,478,923 - -0.5 3,478,928 + +0.6 3,478,928 + -1.2 3,478,928 + +0.5 3,478,928 + -0.7 3,478,928 + -1.5 3,478,928 + +0.1 3,478,929 - +0.2 3,478,929 - -0.6 3,478,929 - -0.6 3,478,929 - -0.1 3,478,929 - +0.1 3,478,929 - -0.5 3,478,929 - +0.2 3,478,929 - +0.8 3,478,929 - +0.3 3,478,929 - -0.5 3,478,929 - -1.2 3,478,958 + +0.5 3,478,958 + -0.6 3,478,958 + +0.2 3,478,958 + -0.5 3,478,958 + +0.5 3,478,958 + -0.0 3,478,958 + -0.2 3,478,958 + +0.1 3,478,958 + -1.2 3,478,959 - -0.5 3,478,959 - -0.6 3,478,959 - -0.7 3,478,959 - -0.4 3,478,959 - +0.2 3,478,959 - +0.5 3,478,959 - +0.8 3,478,959 - +0.2 3,478,959 - -0.2 3,479,062 + +0.0 3,479,062 + -0.5 3,479,063 - -1.9 3,479,725 - OH686_16635 0.48 -0.1
Or see this region's nucleotide sequence