Strain Fitness in Pseudomonas sp. S08-1 around OH686_08715

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08705 and OH686_08710 are separated by 12 nucleotidesOH686_08710 and OH686_08715 are separated by 10 nucleotidesOH686_08715 and OH686_08720 overlap by 1 nucleotidesOH686_08720 and OH686_08725 are separated by 5 nucleotides OH686_08705: OH686_08705 - Dipeptide ABC transporter, permease protein DppB, at 1,774,136 to 1,775,146 _08705 OH686_08710: OH686_08710 - Dipeptide ABC transporter, permease protein DppC, at 1,775,159 to 1,776,070 _08710 OH686_08715: OH686_08715 - Dipeptide ABC transporter, ATP-binding protein DppD, at 1,776,081 to 1,777,055 _08715 OH686_08720: OH686_08720 - Dipeptide ABC transporter, ATP-binding protein DppF, at 1,777,055 to 1,778,026 _08720 OH686_08725: OH686_08725 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 1,778,032 to 1,779,165 _08725 Position (kb) 1776 1777 1778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1775.145 kb on - strandat 1775.205 kb on - strandat 1775.487 kb on + strand, within OH686_08710at 1775.488 kb on - strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.687 kb on + strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.688 kb on - strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.735 kb on + strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.736 kb on - strand, within OH686_08710at 1775.942 kb on + strand, within OH686_08710at 1775.942 kb on + strand, within OH686_08710at 1775.942 kb on + strand, within OH686_08710at 1775.942 kb on + strand, within OH686_08710at 1775.943 kb on - strand, within OH686_08710at 1775.943 kb on - strand, within OH686_08710at 1776.055 kb on - strandat 1776.069 kb on - strandat 1776.069 kb on - strandat 1776.181 kb on + strand, within OH686_08715at 1776.181 kb on + strand, within OH686_08715at 1776.181 kb on + strand, within OH686_08715at 1776.181 kb on + strand, within OH686_08715at 1776.181 kb on + strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.182 kb on - strand, within OH686_08715at 1776.393 kb on + strand, within OH686_08715at 1776.393 kb on + strand, within OH686_08715at 1776.393 kb on + strand, within OH686_08715at 1776.393 kb on + strand, within OH686_08715at 1776.394 kb on - strand, within OH686_08715at 1776.394 kb on - strand, within OH686_08715at 1776.394 kb on - strand, within OH686_08715at 1776.394 kb on - strand, within OH686_08715at 1776.394 kb on - strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.759 kb on + strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.760 kb on - strand, within OH686_08715at 1776.822 kb on + strand, within OH686_08715at 1776.822 kb on + strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1776.823 kb on - strand, within OH686_08715at 1777.023 kb on + strandat 1777.023 kb on + strandat 1777.023 kb on + strandat 1777.024 kb on - strandat 1777.024 kb on - strandat 1777.094 kb on + strandat 1777.094 kb on + strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.095 kb on - strandat 1777.355 kb on + strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.356 kb on - strand, within OH686_08720at 1777.493 kb on + strand, within OH686_08720at 1777.493 kb on + strand, within OH686_08720at 1777.493 kb on + strand, within OH686_08720at 1777.494 kb on - strand, within OH686_08720at 1777.642 kb on + strand, within OH686_08720at 1777.642 kb on + strand, within OH686_08720at 1777.642 kb on + strand, within OH686_08720at 1777.642 kb on - strand, within OH686_08720at 1777.643 kb on - strand, within OH686_08720at 1777.643 kb on - strand, within OH686_08720at 1777.661 kb on + strand, within OH686_08720at 1777.661 kb on + strand, within OH686_08720at 1777.673 kb on + strand, within OH686_08720at 1777.673 kb on + strand, within OH686_08720at 1777.674 kb on - strand, within OH686_08720at 1777.674 kb on - strand, within OH686_08720at 1777.702 kb on - strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.736 kb on + strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.737 kb on - strand, within OH686_08720at 1777.778 kb on + strand, within OH686_08720at 1777.778 kb on + strand, within OH686_08720at 1777.778 kb on + strand, within OH686_08720at 1777.779 kb on - strand, within OH686_08720at 1777.779 kb on - strand, within OH686_08720at 1777.799 kb on + strand, within OH686_08720at 1777.799 kb on + strand, within OH686_08720at 1777.799 kb on + strand, within OH686_08720at 1777.799 kb on + strand, within OH686_08720at 1777.800 kb on - strand, within OH686_08720at 1777.800 kb on - strand, within OH686_08720

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,775,145 - -0.9
1,775,205 - -0.0
1,775,487 + OH686_08710 0.36 +0.4
1,775,488 - OH686_08710 0.36 +1.7
1,775,687 + OH686_08710 0.58 +0.3
1,775,687 + OH686_08710 0.58 -1.9
1,775,687 + OH686_08710 0.58 +0.7
1,775,687 + OH686_08710 0.58 +0.4
1,775,687 + OH686_08710 0.58 -0.5
1,775,687 + OH686_08710 0.58 -0.2
1,775,687 + OH686_08710 0.58 +0.4
1,775,687 + OH686_08710 0.58 -0.1
1,775,687 + OH686_08710 0.58 -0.1
1,775,687 + OH686_08710 0.58 -0.2
1,775,687 + OH686_08710 0.58 +0.7
1,775,687 + OH686_08710 0.58 -0.6
1,775,688 - OH686_08710 0.58 +1.9
1,775,688 - OH686_08710 0.58 -0.3
1,775,688 - OH686_08710 0.58 +0.7
1,775,688 - OH686_08710 0.58 +0.7
1,775,688 - OH686_08710 0.58 -0.5
1,775,688 - OH686_08710 0.58 -2.3
1,775,688 - OH686_08710 0.58 -0.1
1,775,688 - OH686_08710 0.58 +0.3
1,775,688 - OH686_08710 0.58 +0.6
1,775,688 - OH686_08710 0.58 +0.6
1,775,688 - OH686_08710 0.58 +0.2
1,775,688 - OH686_08710 0.58 -1.5
1,775,688 - OH686_08710 0.58 -0.7
1,775,735 + OH686_08710 0.63 -0.7
1,775,735 + OH686_08710 0.63 +0.6
1,775,735 + OH686_08710 0.63 -0.3
1,775,735 + OH686_08710 0.63 -0.3
1,775,735 + OH686_08710 0.63 +0.2
1,775,735 + OH686_08710 0.63 -0.3
1,775,735 + OH686_08710 0.63 +0.5
1,775,735 + OH686_08710 0.63 -1.2
1,775,736 - OH686_08710 0.63 -0.5
1,775,736 - OH686_08710 0.63 -0.5
1,775,736 - OH686_08710 0.63 +0.2
1,775,736 - OH686_08710 0.63 +0.4
1,775,736 - OH686_08710 0.63 +0.2
1,775,736 - OH686_08710 0.63 +0.7
1,775,736 - OH686_08710 0.63 +1.3
1,775,736 - OH686_08710 0.63 +0.3
1,775,736 - OH686_08710 0.63 -0.1
1,775,942 + OH686_08710 0.86 -0.1
1,775,942 + OH686_08710 0.86 -1.7
1,775,942 + OH686_08710 0.86 +0.2
1,775,942 + OH686_08710 0.86 +1.6
1,775,943 - OH686_08710 0.86 -0.2
1,775,943 - OH686_08710 0.86 +0.2
1,776,055 - +0.2
1,776,069 - -0.6
1,776,069 - +0.1
1,776,181 + OH686_08715 0.10 +0.2
1,776,181 + OH686_08715 0.10 -1.1
1,776,181 + OH686_08715 0.10 -0.1
1,776,181 + OH686_08715 0.10 +0.1
1,776,181 + OH686_08715 0.10 +0.1
1,776,182 - OH686_08715 0.10 +0.6
1,776,182 - OH686_08715 0.10 +0.2
1,776,182 - OH686_08715 0.10 -0.1
1,776,182 - OH686_08715 0.10 -2.2
1,776,182 - OH686_08715 0.10 -0.6
1,776,182 - OH686_08715 0.10 -0.4
1,776,182 - OH686_08715 0.10 -0.1
1,776,393 + OH686_08715 0.32 +0.5
1,776,393 + OH686_08715 0.32 -0.1
1,776,393 + OH686_08715 0.32 +0.1
1,776,393 + OH686_08715 0.32 +0.8
1,776,394 - OH686_08715 0.32 -0.1
1,776,394 - OH686_08715 0.32 +0.4
1,776,394 - OH686_08715 0.32 +0.5
1,776,394 - OH686_08715 0.32 -0.9
1,776,394 - OH686_08715 0.32 +0.1
1,776,759 + OH686_08715 0.70 +0.2
1,776,759 + OH686_08715 0.70 -1.4
1,776,759 + OH686_08715 0.70 +0.6
1,776,759 + OH686_08715 0.70 -1.2
1,776,759 + OH686_08715 0.70 -0.3
1,776,759 + OH686_08715 0.70 -0.2
1,776,759 + OH686_08715 0.70 +1.2
1,776,759 + OH686_08715 0.70 -0.5
1,776,759 + OH686_08715 0.70 -0.1
1,776,759 + OH686_08715 0.70 +0.6
1,776,760 - OH686_08715 0.70 +0.4
1,776,760 - OH686_08715 0.70 -1.3
1,776,760 - OH686_08715 0.70 +0.9
1,776,760 - OH686_08715 0.70 +0.1
1,776,760 - OH686_08715 0.70 -0.3
1,776,760 - OH686_08715 0.70 +0.2
1,776,822 + OH686_08715 0.76 +0.1
1,776,822 + OH686_08715 0.76 -0.4
1,776,823 - OH686_08715 0.76 -0.5
1,776,823 - OH686_08715 0.76 +0.0
1,776,823 - OH686_08715 0.76 +0.7
1,776,823 - OH686_08715 0.76 +0.4
1,776,823 - OH686_08715 0.76 -0.1
1,776,823 - OH686_08715 0.76 +1.4
1,776,823 - OH686_08715 0.76 +1.9
1,777,023 + -0.1
1,777,023 + +0.9
1,777,023 + -0.4
1,777,024 - +0.6
1,777,024 - -0.1
1,777,094 + +0.7
1,777,094 + +0.4
1,777,095 - +0.4
1,777,095 - +0.9
1,777,095 - -0.1
1,777,095 - -0.7
1,777,095 - -0.9
1,777,095 - -1.3
1,777,095 - -0.5
1,777,355 + OH686_08720 0.31 +0.8
1,777,356 - OH686_08720 0.31 +0.7
1,777,356 - OH686_08720 0.31 -0.7
1,777,356 - OH686_08720 0.31 +0.5
1,777,356 - OH686_08720 0.31 -0.7
1,777,356 - OH686_08720 0.31 -0.8
1,777,356 - OH686_08720 0.31 +0.3
1,777,493 + OH686_08720 0.45 -0.8
1,777,493 + OH686_08720 0.45 -1.0
1,777,493 + OH686_08720 0.45 +0.2
1,777,494 - OH686_08720 0.45 -1.1
1,777,642 + OH686_08720 0.60 -0.6
1,777,642 + OH686_08720 0.60 +0.4
1,777,642 + OH686_08720 0.60 -2.9
1,777,642 - OH686_08720 0.60 -1.1
1,777,643 - OH686_08720 0.60 -1.3
1,777,643 - OH686_08720 0.60 -0.5
1,777,661 + OH686_08720 0.62 -2.0
1,777,661 + OH686_08720 0.62 +0.5
1,777,673 + OH686_08720 0.64 -0.4
1,777,673 + OH686_08720 0.64 -1.4
1,777,674 - OH686_08720 0.64 +0.1
1,777,674 - OH686_08720 0.64 +0.4
1,777,702 - OH686_08720 0.67 +0.2
1,777,736 + OH686_08720 0.70 -0.3
1,777,736 + OH686_08720 0.70 -0.4
1,777,736 + OH686_08720 0.70 -0.1
1,777,736 + OH686_08720 0.70 +0.2
1,777,736 + OH686_08720 0.70 -0.5
1,777,736 + OH686_08720 0.70 +0.4
1,777,736 + OH686_08720 0.70 +0.5
1,777,736 + OH686_08720 0.70 -0.1
1,777,736 + OH686_08720 0.70 -0.7
1,777,736 + OH686_08720 0.70 -0.5
1,777,737 - OH686_08720 0.70 -0.1
1,777,737 - OH686_08720 0.70 -0.4
1,777,737 - OH686_08720 0.70 +0.9
1,777,737 - OH686_08720 0.70 +0.6
1,777,737 - OH686_08720 0.70 +0.5
1,777,737 - OH686_08720 0.70 -1.3
1,777,737 - OH686_08720 0.70 +0.3
1,777,737 - OH686_08720 0.70 -0.5
1,777,737 - OH686_08720 0.70 -0.5
1,777,737 - OH686_08720 0.70 +0.3
1,777,737 - OH686_08720 0.70 +0.4
1,777,778 + OH686_08720 0.74 +1.2
1,777,778 + OH686_08720 0.74 -1.4
1,777,778 + OH686_08720 0.74 +0.2
1,777,779 - OH686_08720 0.74 -0.1
1,777,779 - OH686_08720 0.74 -0.7
1,777,799 + OH686_08720 0.77 -0.3
1,777,799 + OH686_08720 0.77 -0.1
1,777,799 + OH686_08720 0.77 -0.3
1,777,799 + OH686_08720 0.77 -2.1
1,777,800 - OH686_08720 0.77 +0.1
1,777,800 - OH686_08720 0.77 +1.4

Or see this region's nucleotide sequence