Strain Fitness in Pseudomonas sp. S08-1 around OH686_08210

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08200 and OH686_08205 are separated by 0 nucleotidesOH686_08205 and OH686_08210 are separated by 107 nucleotidesOH686_08210 and OH686_08215 are separated by 149 nucleotides OH686_08200: OH686_08200 - AmpG permease, at 1,668,187 to 1,669,797 _08200 OH686_08205: OH686_08205 - Small-conductance mechanosensitive channel, at 1,669,798 to 1,670,634 _08205 OH686_08210: OH686_08210 - UPF0234 protein Yitk, at 1,670,742 to 1,671,221 _08210 OH686_08215: OH686_08215 - COG3706: Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,671,371 to 1,672,336 _08215 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -2 -1 0 1at 1669.916 kb on + strand, within OH686_08205at 1669.916 kb on + strand, within OH686_08205at 1669.917 kb on - strand, within OH686_08205at 1669.917 kb on - strand, within OH686_08205at 1669.982 kb on - strand, within OH686_08205at 1669.982 kb on - strand, within OH686_08205at 1670.070 kb on - strand, within OH686_08205at 1670.070 kb on - strand, within OH686_08205at 1670.092 kb on + strand, within OH686_08205at 1670.092 kb on + strand, within OH686_08205at 1670.092 kb on + strand, within OH686_08205at 1670.092 kb on + strand, within OH686_08205at 1670.092 kb on + strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.093 kb on - strand, within OH686_08205at 1670.427 kb on + strand, within OH686_08205at 1670.427 kb on + strand, within OH686_08205at 1670.428 kb on - strand, within OH686_08205at 1670.428 kb on - strand, within OH686_08205at 1670.570 kb on + strandat 1670.570 kb on + strandat 1670.570 kb on + strandat 1670.571 kb on - strandat 1670.571 kb on - strandat 1670.608 kb on + strandat 1670.609 kb on - strandat 1670.609 kb on - strandat 1670.621 kb on + strandat 1670.621 kb on + strandat 1670.622 kb on - strandat 1670.622 kb on - strandat 1670.699 kb on + strandat 1670.699 kb on + strandat 1670.699 kb on + strandat 1670.699 kb on + strandat 1670.700 kb on - strandat 1670.700 kb on - strandat 1670.700 kb on - strandat 1670.700 kb on - strandat 1670.761 kb on + strandat 1670.761 kb on + strandat 1670.761 kb on + strandat 1670.761 kb on + strandat 1670.761 kb on + strandat 1670.762 kb on - strandat 1670.762 kb on - strandat 1670.762 kb on - strandat 1670.762 kb on - strandat 1670.762 kb on - strandat 1670.894 kb on + strand, within OH686_08210at 1670.894 kb on + strand, within OH686_08210at 1670.894 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.977 kb on + strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1670.978 kb on - strand, within OH686_08210at 1671.283 kb on + strandat 1671.283 kb on + strandat 1671.284 kb on - strandat 1671.301 kb on + strandat 1671.301 kb on + strandat 1671.301 kb on + strandat 1671.301 kb on + strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.302 kb on - strandat 1671.303 kb on + strandat 1671.304 kb on - strandat 1671.304 kb on - strandat 1671.304 kb on - strandat 1671.304 kb on - strandat 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.614 kb on + strand, within OH686_08215at 1671.615 kb on - strand, within OH686_08215at 1671.615 kb on - strand, within OH686_08215at 1671.615 kb on - strand, within OH686_08215at 1671.615 kb on - strand, within OH686_08215at 1671.615 kb on - strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.620 kb on + strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.621 kb on - strand, within OH686_08215at 1671.737 kb on + strand, within OH686_08215at 1671.737 kb on + strand, within OH686_08215at 1671.737 kb on + strand, within OH686_08215at 1671.738 kb on - strand, within OH686_08215at 1671.738 kb on - strand, within OH686_08215at 1671.738 kb on - strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.929 kb on + strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.930 kb on - strand, within OH686_08215at 1671.974 kb on + strand, within OH686_08215

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,669,916 + OH686_08205 0.14 +0.6
1,669,916 + OH686_08205 0.14 +0.5
1,669,917 - OH686_08205 0.14 -0.3
1,669,917 - OH686_08205 0.14 +0.4
1,669,982 - OH686_08205 0.22 -1.2
1,669,982 - OH686_08205 0.22 -0.4
1,670,070 - OH686_08205 0.32 +0.3
1,670,070 - OH686_08205 0.32 -1.2
1,670,092 + OH686_08205 0.35 +0.4
1,670,092 + OH686_08205 0.35 -0.8
1,670,092 + OH686_08205 0.35 +0.2
1,670,092 + OH686_08205 0.35 -0.8
1,670,092 + OH686_08205 0.35 +0.8
1,670,093 - OH686_08205 0.35 -0.4
1,670,093 - OH686_08205 0.35 -0.3
1,670,093 - OH686_08205 0.35 +1.1
1,670,093 - OH686_08205 0.35 +0.2
1,670,093 - OH686_08205 0.35 +0.9
1,670,093 - OH686_08205 0.35 -0.3
1,670,093 - OH686_08205 0.35 -0.1
1,670,427 + OH686_08205 0.75 +0.0
1,670,427 + OH686_08205 0.75 -0.9
1,670,428 - OH686_08205 0.75 +0.1
1,670,428 - OH686_08205 0.75 +0.2
1,670,570 + -1.2
1,670,570 + +1.0
1,670,570 + +0.4
1,670,571 - +0.8
1,670,571 - +0.9
1,670,608 + -0.2
1,670,609 - +0.5
1,670,609 - -0.1
1,670,621 + -0.4
1,670,621 + +0.4
1,670,622 - +0.8
1,670,622 - -0.4
1,670,699 + -0.1
1,670,699 + -0.2
1,670,699 + +0.4
1,670,699 + +0.4
1,670,700 - -0.1
1,670,700 - -0.4
1,670,700 - -0.3
1,670,700 - -0.3
1,670,761 + +0.0
1,670,761 + +0.9
1,670,761 + +0.3
1,670,761 + -0.1
1,670,761 + +0.2
1,670,762 - -0.5
1,670,762 - +0.1
1,670,762 - -0.4
1,670,762 - -0.4
1,670,762 - -0.3
1,670,894 + OH686_08210 0.32 -1.0
1,670,894 + OH686_08210 0.32 +0.0
1,670,894 + OH686_08210 0.32 -0.8
1,670,977 + OH686_08210 0.49 +0.3
1,670,977 + OH686_08210 0.49 +0.9
1,670,977 + OH686_08210 0.49 -0.1
1,670,977 + OH686_08210 0.49 +1.0
1,670,977 + OH686_08210 0.49 -0.6
1,670,977 + OH686_08210 0.49 +0.4
1,670,978 - OH686_08210 0.49 +0.4
1,670,978 - OH686_08210 0.49 -0.6
1,670,978 - OH686_08210 0.49 -0.2
1,670,978 - OH686_08210 0.49 +1.2
1,670,978 - OH686_08210 0.49 +0.3
1,670,978 - OH686_08210 0.49 -0.6
1,670,978 - OH686_08210 0.49 +0.6
1,670,978 - OH686_08210 0.49 +0.3
1,671,283 + -0.2
1,671,283 + +0.4
1,671,284 - +0.6
1,671,301 + -0.2
1,671,301 + +1.2
1,671,301 + -1.4
1,671,301 + -0.6
1,671,302 - +0.2
1,671,302 - -0.2
1,671,302 - +0.4
1,671,302 - -0.4
1,671,302 - -0.1
1,671,302 - +0.6
1,671,302 - -1.2
1,671,303 + +0.4
1,671,304 - -0.4
1,671,304 - +0.2
1,671,304 - +0.9
1,671,304 - +0.4
1,671,614 + OH686_08215 0.25 -1.9
1,671,614 + OH686_08215 0.25 -0.4
1,671,614 + OH686_08215 0.25 -0.9
1,671,614 + OH686_08215 0.25 +0.9
1,671,614 + OH686_08215 0.25 -0.2
1,671,614 + OH686_08215 0.25 +0.4
1,671,614 + OH686_08215 0.25 +0.0
1,671,614 + OH686_08215 0.25 +0.8
1,671,614 + OH686_08215 0.25 +0.3
1,671,614 + OH686_08215 0.25 +1.0
1,671,614 + OH686_08215 0.25 +0.4
1,671,615 - OH686_08215 0.25 +0.3
1,671,615 - OH686_08215 0.25 +0.3
1,671,615 - OH686_08215 0.25 +0.3
1,671,615 - OH686_08215 0.25 -0.8
1,671,615 - OH686_08215 0.25 +0.2
1,671,620 + OH686_08215 0.26 +0.2
1,671,620 + OH686_08215 0.26 +0.6
1,671,620 + OH686_08215 0.26 -0.3
1,671,620 + OH686_08215 0.26 -1.8
1,671,620 + OH686_08215 0.26 +0.8
1,671,620 + OH686_08215 0.26 +1.3
1,671,620 + OH686_08215 0.26 -0.8
1,671,620 + OH686_08215 0.26 -0.8
1,671,620 + OH686_08215 0.26 -0.1
1,671,620 + OH686_08215 0.26 +0.9
1,671,620 + OH686_08215 0.26 +0.6
1,671,620 + OH686_08215 0.26 +0.1
1,671,620 + OH686_08215 0.26 -0.4
1,671,620 + OH686_08215 0.26 +0.1
1,671,620 + OH686_08215 0.26 +0.8
1,671,620 + OH686_08215 0.26 +1.5
1,671,620 + OH686_08215 0.26 +0.7
1,671,620 + OH686_08215 0.26 +0.6
1,671,620 + OH686_08215 0.26 +0.2
1,671,620 + OH686_08215 0.26 -0.0
1,671,620 + OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 +0.1
1,671,621 - OH686_08215 0.26 -0.4
1,671,621 - OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 -1.9
1,671,621 - OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 +0.7
1,671,621 - OH686_08215 0.26 +0.2
1,671,621 - OH686_08215 0.26 -1.1
1,671,621 - OH686_08215 0.26 -0.6
1,671,621 - OH686_08215 0.26 +0.9
1,671,621 - OH686_08215 0.26 +0.7
1,671,621 - OH686_08215 0.26 -0.1
1,671,621 - OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 +0.2
1,671,621 - OH686_08215 0.26 -0.4
1,671,621 - OH686_08215 0.26 +0.8
1,671,621 - OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 +0.3
1,671,621 - OH686_08215 0.26 +0.5
1,671,621 - OH686_08215 0.26 -0.1
1,671,621 - OH686_08215 0.26 -1.2
1,671,621 - OH686_08215 0.26 +0.3
1,671,621 - OH686_08215 0.26 -0.2
1,671,621 - OH686_08215 0.26 -0.9
1,671,621 - OH686_08215 0.26 -0.0
1,671,737 + OH686_08215 0.38 +1.4
1,671,737 + OH686_08215 0.38 -0.4
1,671,737 + OH686_08215 0.38 +0.1
1,671,738 - OH686_08215 0.38 -0.4
1,671,738 - OH686_08215 0.38 +0.7
1,671,738 - OH686_08215 0.38 -1.4
1,671,929 + OH686_08215 0.58 +0.6
1,671,929 + OH686_08215 0.58 +0.1
1,671,929 + OH686_08215 0.58 +0.7
1,671,929 + OH686_08215 0.58 -0.2
1,671,929 + OH686_08215 0.58 -0.4
1,671,929 + OH686_08215 0.58 +1.5
1,671,930 - OH686_08215 0.58 +0.4
1,671,930 - OH686_08215 0.58 -0.4
1,671,930 - OH686_08215 0.58 -0.6
1,671,930 - OH686_08215 0.58 -0.4
1,671,930 - OH686_08215 0.58 -0.4
1,671,930 - OH686_08215 0.58 +0.1
1,671,974 + OH686_08215 0.62 +1.7

Or see this region's nucleotide sequence