Strain Fitness in Pseudomonas sp. S08-1 around OH686_06820

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06810 and OH686_06815 are separated by 40 nucleotidesOH686_06815 and OH686_06820 are separated by 25 nucleotidesOH686_06820 and OH686_06825 are separated by 78 nucleotidesOH686_06825 and OH686_06830 are separated by 160 nucleotides OH686_06810: OH686_06810 - Outer membrane lipoprotein omp16 precursor, at 1,388,644 to 1,389,423 _06810 OH686_06815: OH686_06815 - O-acetyl-ADP-ribose deacetylase, at 1,389,464 to 1,389,967 _06815 OH686_06820: OH686_06820 - Putative lipoprotein in cluster with COG2110, at 1,389,993 to 1,390,322 _06820 OH686_06825: OH686_06825 - DUF124 domain-containing protein, at 1,390,401 to 1,391,147 _06825 OH686_06830: OH686_06830 - hypothetical protein, at 1,391,308 to 1,392,597 _06830 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -2 -1 0 1at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.142 kb on + strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.143 kb on - strand, within OH686_06810at 1389.422 kb on - strandat 1389.553 kb on + strand, within OH686_06815at 1389.554 kb on - strand, within OH686_06815at 1389.609 kb on + strand, within OH686_06815at 1389.609 kb on + strand, within OH686_06815at 1389.609 kb on + strand, within OH686_06815at 1389.610 kb on - strand, within OH686_06815at 1389.610 kb on - strand, within OH686_06815at 1389.934 kb on + strandat 1389.935 kb on - strandat 1389.935 kb on - strandat 1389.994 kb on + strandat 1389.994 kb on + strandat 1389.995 kb on - strandat 1389.995 kb on - strandat 1389.995 kb on - strandat 1390.156 kb on + strand, within OH686_06820at 1390.156 kb on + strand, within OH686_06820at 1390.156 kb on + strand, within OH686_06820at 1390.156 kb on + strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.157 kb on - strand, within OH686_06820at 1390.234 kb on + strand, within OH686_06820at 1390.235 kb on - strand, within OH686_06820at 1390.235 kb on - strand, within OH686_06820at 1390.241 kb on - strand, within OH686_06820at 1390.243 kb on + strand, within OH686_06820at 1390.243 kb on + strand, within OH686_06820at 1390.243 kb on + strand, within OH686_06820at 1390.244 kb on - strand, within OH686_06820at 1390.244 kb on - strand, within OH686_06820at 1390.244 kb on - strand, within OH686_06820at 1390.244 kb on - strand, within OH686_06820at 1390.244 kb on - strand, within OH686_06820at 1390.402 kb on + strandat 1390.402 kb on + strandat 1390.402 kb on + strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.403 kb on - strandat 1390.450 kb on + strandat 1390.450 kb on + strandat 1390.451 kb on - strandat 1390.451 kb on - strandat 1390.451 kb on - strandat 1390.451 kb on - strandat 1390.582 kb on + strand, within OH686_06825at 1390.599 kb on - strand, within OH686_06825at 1390.783 kb on + strand, within OH686_06825at 1390.783 kb on + strand, within OH686_06825at 1390.784 kb on - strand, within OH686_06825at 1390.784 kb on - strand, within OH686_06825at 1390.784 kb on - strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.022 kb on + strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.023 kb on - strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.038 kb on + strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.039 kb on - strand, within OH686_06825at 1391.047 kb on - strand, within OH686_06825at 1391.125 kb on + strandat 1391.126 kb on - strandat 1391.205 kb on + strandat 1391.205 kb on + strandat 1391.205 kb on + strandat 1391.205 kb on + strandat 1391.205 kb on + strandat 1391.205 kb on + strandat 1391.206 kb on - strandat 1391.206 kb on - strandat 1391.206 kb on - strandat 1391.206 kb on - strandat 1391.206 kb on - strandat 1391.217 kb on - strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.233 kb on + strandat 1391.234 kb on - strandat 1391.258 kb on + strandat 1391.258 kb on + strandat 1391.259 kb on - strandat 1391.259 kb on - strandat 1391.259 kb on - strandat 1391.259 kb on - strandat 1391.274 kb on + strandat 1391.275 kb on - strandat 1391.309 kb on + strandat 1391.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,389,142 + OH686_06810 0.64 -0.5
1,389,142 + OH686_06810 0.64 -0.1
1,389,142 + OH686_06810 0.64 -0.2
1,389,142 + OH686_06810 0.64 -0.1
1,389,142 + OH686_06810 0.64 -0.4
1,389,142 + OH686_06810 0.64 +0.2
1,389,142 + OH686_06810 0.64 +0.8
1,389,142 + OH686_06810 0.64 -0.1
1,389,142 + OH686_06810 0.64 +0.3
1,389,143 - OH686_06810 0.64 +0.1
1,389,143 - OH686_06810 0.64 +0.2
1,389,143 - OH686_06810 0.64 -0.4
1,389,143 - OH686_06810 0.64 -0.5
1,389,143 - OH686_06810 0.64 -0.1
1,389,143 - OH686_06810 0.64 +1.2
1,389,422 - +0.3
1,389,553 + OH686_06815 0.18 -0.2
1,389,554 - OH686_06815 0.18 +0.3
1,389,609 + OH686_06815 0.29 -1.6
1,389,609 + OH686_06815 0.29 +0.9
1,389,609 + OH686_06815 0.29 +0.5
1,389,610 - OH686_06815 0.29 +0.8
1,389,610 - OH686_06815 0.29 +0.7
1,389,934 + +0.2
1,389,935 - -0.7
1,389,935 - -0.6
1,389,994 + -0.3
1,389,994 + +0.2
1,389,995 - -1.6
1,389,995 - +0.3
1,389,995 - -0.4
1,390,156 + OH686_06820 0.49 +0.1
1,390,156 + OH686_06820 0.49 +0.3
1,390,156 + OH686_06820 0.49 +0.7
1,390,156 + OH686_06820 0.49 -0.1
1,390,157 - OH686_06820 0.50 -0.1
1,390,157 - OH686_06820 0.50 -0.2
1,390,157 - OH686_06820 0.50 -0.7
1,390,157 - OH686_06820 0.50 +0.4
1,390,157 - OH686_06820 0.50 +0.3
1,390,157 - OH686_06820 0.50 -0.2
1,390,157 - OH686_06820 0.50 -1.6
1,390,157 - OH686_06820 0.50 +0.5
1,390,157 - OH686_06820 0.50 +0.6
1,390,157 - OH686_06820 0.50 -0.5
1,390,157 - OH686_06820 0.50 -0.9
1,390,234 + OH686_06820 0.73 -0.5
1,390,235 - OH686_06820 0.73 -0.8
1,390,235 - OH686_06820 0.73 +0.4
1,390,241 - OH686_06820 0.75 -1.7
1,390,243 + OH686_06820 0.76 +0.9
1,390,243 + OH686_06820 0.76 +0.5
1,390,243 + OH686_06820 0.76 -0.4
1,390,244 - OH686_06820 0.76 -0.1
1,390,244 - OH686_06820 0.76 +0.2
1,390,244 - OH686_06820 0.76 -0.5
1,390,244 - OH686_06820 0.76 +0.3
1,390,244 - OH686_06820 0.76 +0.5
1,390,402 + +0.2
1,390,402 + -0.8
1,390,402 + -0.2
1,390,403 - +0.0
1,390,403 - -0.5
1,390,403 - -1.0
1,390,403 - +0.3
1,390,403 - -0.4
1,390,403 - -1.6
1,390,403 - -0.3
1,390,403 - -1.6
1,390,403 - -2.6
1,390,450 + -0.5
1,390,450 + -1.6
1,390,451 - +0.1
1,390,451 - -1.1
1,390,451 - -0.5
1,390,451 - +0.1
1,390,582 + OH686_06825 0.24 +0.7
1,390,599 - OH686_06825 0.27 +0.3
1,390,783 + OH686_06825 0.51 +0.6
1,390,783 + OH686_06825 0.51 -1.0
1,390,784 - OH686_06825 0.51 +1.5
1,390,784 - OH686_06825 0.51 +0.3
1,390,784 - OH686_06825 0.51 -0.2
1,391,022 + OH686_06825 0.83 -0.2
1,391,022 + OH686_06825 0.83 +0.3
1,391,022 + OH686_06825 0.83 +0.3
1,391,022 + OH686_06825 0.83 +0.8
1,391,022 + OH686_06825 0.83 -1.6
1,391,022 + OH686_06825 0.83 +0.6
1,391,023 - OH686_06825 0.83 +1.3
1,391,023 - OH686_06825 0.83 -0.3
1,391,023 - OH686_06825 0.83 -0.5
1,391,023 - OH686_06825 0.83 -0.4
1,391,023 - OH686_06825 0.83 -0.6
1,391,023 - OH686_06825 0.83 +1.3
1,391,023 - OH686_06825 0.83 -0.2
1,391,038 + OH686_06825 0.85 +0.5
1,391,038 + OH686_06825 0.85 +0.2
1,391,038 + OH686_06825 0.85 -1.0
1,391,038 + OH686_06825 0.85 +0.0
1,391,038 + OH686_06825 0.85 +0.7
1,391,038 + OH686_06825 0.85 -1.6
1,391,038 + OH686_06825 0.85 -0.8
1,391,038 + OH686_06825 0.85 +0.2
1,391,038 + OH686_06825 0.85 +1.1
1,391,038 + OH686_06825 0.85 -1.1
1,391,038 + OH686_06825 0.85 -0.0
1,391,038 + OH686_06825 0.85 +0.2
1,391,038 + OH686_06825 0.85 +0.0
1,391,038 + OH686_06825 0.85 -1.0
1,391,038 + OH686_06825 0.85 +0.2
1,391,038 + OH686_06825 0.85 -1.0
1,391,039 - OH686_06825 0.85 -0.0
1,391,039 - OH686_06825 0.85 +0.2
1,391,039 - OH686_06825 0.85 +0.4
1,391,039 - OH686_06825 0.85 +1.1
1,391,039 - OH686_06825 0.85 -0.6
1,391,039 - OH686_06825 0.85 +0.7
1,391,039 - OH686_06825 0.85 +0.4
1,391,039 - OH686_06825 0.85 -0.6
1,391,039 - OH686_06825 0.85 -1.2
1,391,039 - OH686_06825 0.85 +0.6
1,391,039 - OH686_06825 0.85 -0.2
1,391,047 - OH686_06825 0.86 -0.2
1,391,125 + +0.7
1,391,126 - +0.1
1,391,205 + -0.0
1,391,205 + -0.4
1,391,205 + -1.3
1,391,205 + -0.2
1,391,205 + +0.1
1,391,205 + +0.8
1,391,206 - -0.7
1,391,206 - -1.2
1,391,206 - +0.3
1,391,206 - -0.7
1,391,206 - -0.5
1,391,217 - -0.2
1,391,233 + +0.8
1,391,233 + +0.2
1,391,233 + +0.1
1,391,233 + -0.7
1,391,233 + +1.1
1,391,233 + +0.9
1,391,233 + -2.0
1,391,234 - +0.6
1,391,258 + -0.5
1,391,258 + -0.1
1,391,259 - -1.3
1,391,259 - +1.0
1,391,259 - -0.9
1,391,259 - +1.2
1,391,274 + +0.6
1,391,275 - +0.0
1,391,309 + +0.6
1,391,317 - +0.0

Or see this region's nucleotide sequence