Strain Fitness in Pseudomonas sp. S08-1 around OH686_04670

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04660 and OH686_04665 overlap by 4 nucleotidesOH686_04665 and OH686_04670 are separated by 9 nucleotidesOH686_04670 and OH686_04675 overlap by 4 nucleotidesOH686_04675 and OH686_04680 overlap by 14 nucleotides OH686_04660: OH686_04660 - hypothetical protein, at 963,773 to 965,143 _04660 OH686_04665: OH686_04665 - Two-component system response regulator QseB, at 965,140 to 965,802 _04665 OH686_04670: OH686_04670 - hypothetical protein, at 965,812 to 966,456 _04670 OH686_04675: OH686_04675 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 966,453 to 967,250 _04675 OH686_04680: OH686_04680 - Acyl-CoA long-chain enzyme transcriptional related heme family, at 967,237 to 967,917 _04680 Position (kb) 965 966 967Strain fitness (log2 ratio) -2 -1 0 1 2at 964.884 kb on + strand, within OH686_04660at 964.885 kb on - strand, within OH686_04660at 965.028 kb on + strandat 965.029 kb on - strandat 965.061 kb on + strandat 965.061 kb on + strandat 965.267 kb on + strand, within OH686_04665at 965.268 kb on - strand, within OH686_04665at 965.339 kb on + strand, within OH686_04665at 965.340 kb on - strand, within OH686_04665at 965.340 kb on - strand, within OH686_04665at 965.375 kb on + strand, within OH686_04665at 965.376 kb on - strand, within OH686_04665at 965.459 kb on - strand, within OH686_04665at 965.510 kb on + strand, within OH686_04665at 965.510 kb on + strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.730 kb on - strand, within OH686_04665at 965.942 kb on + strand, within OH686_04670at 965.942 kb on + strand, within OH686_04670at 965.942 kb on + strand, within OH686_04670at 965.943 kb on - strand, within OH686_04670at 965.943 kb on - strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 966.003 kb on + strand, within OH686_04670at 966.083 kb on + strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.365 kb on - strand, within OH686_04670at 966.577 kb on + strand, within OH686_04675at 966.577 kb on + strand, within OH686_04675at 966.612 kb on + strand, within OH686_04675at 966.612 kb on + strand, within OH686_04675at 966.613 kb on - strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.803 kb on - strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 967.092 kb on + strand, within OH686_04675at 967.093 kb on - strand, within OH686_04675at 967.093 kb on - strand, within OH686_04675at 967.279 kb on + strandat 967.301 kb on + strandat 967.302 kb on - strandat 967.311 kb on - strand, within OH686_04680at 967.311 kb on - strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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964,884 + OH686_04660 0.81 -1.9
964,885 - OH686_04660 0.81 +0.3
965,028 + +0.2
965,029 - -0.0
965,061 + -0.5
965,061 + +0.4
965,267 + OH686_04665 0.19 -0.3
965,268 - OH686_04665 0.19 +1.5
965,339 + OH686_04665 0.30 -0.2
965,340 - OH686_04665 0.30 -0.0
965,340 - OH686_04665 0.30 +0.8
965,375 + OH686_04665 0.35 -0.3
965,376 - OH686_04665 0.36 -0.5
965,459 - OH686_04665 0.48 +0.9
965,510 + OH686_04665 0.56 -0.2
965,510 + OH686_04665 0.56 +0.6
965,511 - OH686_04665 0.56 -0.1
965,511 - OH686_04665 0.56 +1.1
965,511 - OH686_04665 0.56 +0.5
965,730 - OH686_04665 0.89 -2.0
965,942 + OH686_04670 0.20 -1.6
965,942 + OH686_04670 0.20 -0.4
965,942 + OH686_04670 0.20 +1.1
965,943 - OH686_04670 0.20 -0.0
965,943 - OH686_04670 0.20 -0.7
965,978 + OH686_04670 0.26 -0.4
965,978 + OH686_04670 0.26 -1.8
965,978 + OH686_04670 0.26 +0.2
965,978 + OH686_04670 0.26 -0.0
965,978 + OH686_04670 0.26 +0.0
965,979 - OH686_04670 0.26 -0.5
965,979 - OH686_04670 0.26 -0.0
965,979 - OH686_04670 0.26 -0.1
965,979 - OH686_04670 0.26 -0.2
965,979 - OH686_04670 0.26 +1.1
965,979 - OH686_04670 0.26 +0.9
966,003 + OH686_04670 0.30 +0.3
966,083 + OH686_04670 0.42 +0.0
966,084 - OH686_04670 0.42 -0.4
966,084 - OH686_04670 0.42 -0.7
966,084 - OH686_04670 0.42 +0.0
966,084 - OH686_04670 0.42 +0.1
966,084 - OH686_04670 0.42 +0.0
966,084 - OH686_04670 0.42 -0.8
966,084 - OH686_04670 0.42 +0.5
966,084 - OH686_04670 0.42 -0.8
966,084 - OH686_04670 0.42 +0.4
966,104 + OH686_04670 0.45 -1.6
966,104 + OH686_04670 0.45 -0.2
966,104 + OH686_04670 0.45 -0.1
966,104 + OH686_04670 0.45 -0.9
966,105 - OH686_04670 0.45 +0.3
966,105 - OH686_04670 0.45 -0.5
966,105 - OH686_04670 0.45 +0.5
966,156 - OH686_04670 0.53 -0.2
966,156 - OH686_04670 0.53 +0.2
966,156 - OH686_04670 0.53 -0.8
966,156 - OH686_04670 0.53 +1.3
966,338 + OH686_04670 0.82 -0.7
966,338 + OH686_04670 0.82 -0.7
966,338 + OH686_04670 0.82 -0.2
966,365 - OH686_04670 0.86 +0.3
966,577 + OH686_04675 0.16 -0.1
966,577 + OH686_04675 0.16 -0.4
966,612 + OH686_04675 0.20 +0.2
966,612 + OH686_04675 0.20 +0.7
966,613 - OH686_04675 0.20 +0.7
966,721 + OH686_04675 0.34 +1.9
966,721 + OH686_04675 0.34 -0.7
966,721 + OH686_04675 0.34 -0.8
966,722 - OH686_04675 0.34 -0.3
966,722 - OH686_04675 0.34 +0.2
966,722 - OH686_04675 0.34 -0.5
966,802 + OH686_04675 0.44 -0.1
966,802 + OH686_04675 0.44 +0.1
966,802 + OH686_04675 0.44 +0.2
966,802 + OH686_04675 0.44 +0.4
966,802 + OH686_04675 0.44 -0.1
966,802 + OH686_04675 0.44 -0.9
966,803 - OH686_04675 0.44 -1.8
966,835 + OH686_04675 0.48 +1.3
966,835 + OH686_04675 0.48 +0.8
966,835 + OH686_04675 0.48 -0.4
966,835 + OH686_04675 0.48 -2.3
966,835 + OH686_04675 0.48 +0.2
966,835 + OH686_04675 0.48 +0.8
966,835 + OH686_04675 0.48 -1.0
966,835 + OH686_04675 0.48 -1.2
966,835 + OH686_04675 0.48 +0.7
966,835 + OH686_04675 0.48 +0.7
966,836 - OH686_04675 0.48 +1.0
966,836 - OH686_04675 0.48 -0.0
966,836 - OH686_04675 0.48 +1.6
967,092 + OH686_04675 0.80 +0.9
967,093 - OH686_04675 0.80 -0.3
967,093 - OH686_04675 0.80 -1.0
967,279 + +0.6
967,301 + +0.1
967,302 - +0.7
967,311 - OH686_04680 0.11 +0.7
967,311 - OH686_04680 0.11 +1.2
967,427 + OH686_04680 0.28 -0.1
967,427 + OH686_04680 0.28 -0.8
967,427 + OH686_04680 0.28 -1.3
967,427 + OH686_04680 0.28 -0.0
967,427 + OH686_04680 0.28 +0.3
967,427 + OH686_04680 0.28 +2.0
967,427 + OH686_04680 0.28 +0.2
967,427 + OH686_04680 0.28 +0.5
967,428 - OH686_04680 0.28 -0.1
967,428 - OH686_04680 0.28 -0.4
967,428 - OH686_04680 0.28 -0.0
967,428 - OH686_04680 0.28 -0.0
967,428 - OH686_04680 0.28 -0.4
967,428 - OH686_04680 0.28 -0.3

Or see this region's nucleotide sequence