Experiment: Sorgoleone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_01610 and OH686_01615 are separated by 103 nucleotides OH686_01615 and OH686_01620 are separated by 61 nucleotides OH686_01620 and OH686_01625 are separated by 163 nucleotides
OH686_01610: OH686_01610 - glutathione-disulfide reductase, at 348,318 to 349,676
_01610
OH686_01615: OH686_01615 - Putative ring-cleaving dioxygenase, at 349,780 to 350,202
_01615
OH686_01620: OH686_01620 - UTP--glucose-1-phosphate uridylyltransferase, at 350,264 to 351,103
_01620
OH686_01625: OH686_01625 - Nonspecific porin and structural outer membrane protein OprF, at 351,267 to 352,229
_01625
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.368 kb on - strand, within OH686_01610 at 349.385 kb on - strand, within OH686_01610 at 349.385 kb on - strand, within OH686_01610 at 349.385 kb on - strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.513 kb on + strand, within OH686_01610 at 349.514 kb on - strand, within OH686_01610 at 349.514 kb on - strand, within OH686_01610 at 349.514 kb on - strand, within OH686_01610 at 349.525 kb on + strand, within OH686_01610 at 349.669 kb on + strand at 349.670 kb on - strand at 349.670 kb on - strand at 349.670 kb on - strand at 349.704 kb on + strand at 349.704 kb on + strand at 349.705 kb on - strand at 349.705 kb on - strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.729 kb on + strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.730 kb on - strand at 349.741 kb on + strand at 349.741 kb on + strand at 349.741 kb on + strand at 349.741 kb on + strand at 349.741 kb on + strand at 349.741 kb on + strand at 349.742 kb on - strand at 349.747 kb on + strand at 349.747 kb on + strand at 349.748 kb on - strand at 349.748 kb on - strand at 349.990 kb on + strand, within OH686_01615 at 349.991 kb on - strand, within OH686_01615 at 349.991 kb on - strand, within OH686_01615 at 350.108 kb on - strand, within OH686_01615 at 350.110 kb on + strand, within OH686_01615 at 350.110 kb on + strand, within OH686_01615 at 350.110 kb on + strand, within OH686_01615 at 350.111 kb on - strand, within OH686_01615 at 350.111 kb on - strand, within OH686_01615 at 350.140 kb on + strand, within OH686_01615 at 350.140 kb on + strand, within OH686_01615 at 350.140 kb on + strand, within OH686_01615 at 350.140 kb on + strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.141 kb on - strand, within OH686_01615 at 350.155 kb on + strand, within OH686_01615 at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.262 kb on + strand at 350.263 kb on - strand at 350.263 kb on - strand at 350.263 kb on - strand at 350.268 kb on + strand at 350.269 kb on - strand at 350.269 kb on - strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.287 kb on - strand at 350.287 kb on - strand at 350.287 kb on - strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.367 kb on + strand, within OH686_01620 at 350.368 kb on - strand, within OH686_01620 at 350.368 kb on - strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.485 kb on - strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.596 kb on - strand, within OH686_01620 at 350.596 kb on - strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.658 kb on + strand, within OH686_01620 at 350.658 kb on + strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.895 kb on + strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.992 kb on - strand, within OH686_01620 at 350.992 kb on - strand, within OH686_01620 at 351.069 kb on + strand at 351.116 kb on + strand at 351.117 kb on - strand at 351.117 kb on - strand at 351.117 kb on - strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.165 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.167 kb on - strand at 351.167 kb on - strand at 351.167 kb on - strand at 351.191 kb on - strand at 351.206 kb on + strand at 351.235 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.286 kb on - strand at 351.286 kb on - strand at 351.286 kb on - strand at 351.297 kb on + strand at 351.298 kb on - strand at 351.361 kb on + strand at 351.391 kb on - strand, within OH686_01625 at 351.391 kb on - strand, within OH686_01625 at 351.391 kb on - strand, within OH686_01625 at 351.397 kb on + strand, within OH686_01625 at 351.411 kb on + strand, within OH686_01625 at 351.411 kb on + strand, within OH686_01625 at 351.412 kb on - strand, within OH686_01625 at 351.458 kb on - strand, within OH686_01625 at 351.458 kb on - strand, within OH686_01625
Per-strain Table
Position Strand Gene LocusTag Fraction Sorgoleone (C) remove 349,368 - OH686_01610 0.77 -0.7 349,385 - OH686_01610 0.79 +0.5 349,385 - OH686_01610 0.79 -1.0 349,385 - OH686_01610 0.79 -0.8 349,513 + OH686_01610 0.88 -1.0 349,513 + OH686_01610 0.88 -1.5 349,513 + OH686_01610 0.88 -1.2 349,513 + OH686_01610 0.88 +0.1 349,513 + OH686_01610 0.88 -1.4 349,513 + OH686_01610 0.88 -0.2 349,514 - OH686_01610 0.88 -0.1 349,514 - OH686_01610 0.88 -0.5 349,514 - OH686_01610 0.88 -0.4 349,525 + OH686_01610 0.89 -0.7 349,669 + -0.7 349,670 - +0.2 349,670 - +1.4 349,670 - -0.3 349,704 + -0.1 349,704 + -0.8 349,705 - +0.2 349,705 - +0.3 349,729 + -0.8 349,729 + -0.7 349,729 + -0.1 349,729 + -0.9 349,729 + -0.9 349,729 + +0.5 349,729 + +0.0 349,729 + +0.9 349,729 + +0.6 349,729 + +0.2 349,729 + +0.3 349,729 + +0.4 349,729 + -0.4 349,730 - +0.3 349,730 - +0.3 349,730 - -1.1 349,730 - -0.4 349,730 - -0.2 349,730 - -0.5 349,730 - -1.6 349,730 - +0.3 349,730 - -0.7 349,741 + +0.3 349,741 + -0.6 349,741 + -0.3 349,741 + -0.8 349,741 + +0.5 349,741 + +0.1 349,742 - -0.0 349,747 + +1.5 349,747 + +0.4 349,748 - -0.7 349,748 - +1.0 349,990 + OH686_01615 0.50 -0.5 349,991 - OH686_01615 0.50 +0.5 349,991 - OH686_01615 0.50 +0.1 350,108 - OH686_01615 0.78 +0.6 350,110 + OH686_01615 0.78 +0.4 350,110 + OH686_01615 0.78 +0.2 350,110 + OH686_01615 0.78 +1.2 350,111 - OH686_01615 0.78 -1.0 350,111 - OH686_01615 0.78 -0.2 350,140 + OH686_01615 0.85 -0.3 350,140 + OH686_01615 0.85 -0.7 350,140 + OH686_01615 0.85 -0.3 350,140 + OH686_01615 0.85 -0.2 350,141 - OH686_01615 0.85 -1.6 350,141 - OH686_01615 0.85 +0.3 350,141 - OH686_01615 0.85 -0.6 350,141 - OH686_01615 0.85 +0.3 350,141 - OH686_01615 0.85 -1.0 350,141 - OH686_01615 0.85 -0.2 350,141 - OH686_01615 0.85 -1.0 350,141 - OH686_01615 0.85 +0.6 350,141 - OH686_01615 0.85 +2.5 350,155 + OH686_01615 0.89 -0.4 350,262 + -0.5 350,262 + +0.5 350,262 + -0.2 350,262 + +0.2 350,262 + -0.4 350,262 + -0.1 350,262 + -0.1 350,262 + +0.0 350,262 + -0.3 350,262 + +0.5 350,262 + -0.5 350,263 - +0.0 350,263 - -0.8 350,263 - -1.0 350,268 + -0.9 350,269 - -1.0 350,269 - -0.6 350,286 + -0.1 350,286 + +0.1 350,286 + +0.2 350,286 + +1.8 350,287 - -0.7 350,287 - -0.3 350,287 - -0.6 350,322 + +2.7 350,322 + -1.1 350,322 + -0.3 350,322 + -1.6 350,322 + -0.3 350,323 - -0.4 350,323 - +0.2 350,323 - -0.9 350,323 - -0.4 350,323 - -1.2 350,323 - -2.2 350,367 + OH686_01620 0.12 -0.4 350,368 - OH686_01620 0.12 -0.0 350,368 - OH686_01620 0.12 -0.7 350,484 + OH686_01620 0.26 +0.4 350,484 + OH686_01620 0.26 -0.0 350,484 + OH686_01620 0.26 -0.3 350,484 + OH686_01620 0.26 -0.1 350,484 + OH686_01620 0.26 -1.0 350,484 + OH686_01620 0.26 -0.9 350,484 + OH686_01620 0.26 +0.1 350,485 - OH686_01620 0.26 -0.1 350,595 + OH686_01620 0.39 +0.5 350,595 + OH686_01620 0.39 -0.1 350,595 + OH686_01620 0.39 +0.3 350,595 + OH686_01620 0.39 -2.1 350,596 - OH686_01620 0.40 -0.2 350,596 - OH686_01620 0.40 -0.4 350,618 + OH686_01620 0.42 +0.4 350,618 + OH686_01620 0.42 +0.8 350,618 + OH686_01620 0.42 -0.9 350,619 - OH686_01620 0.42 -0.1 350,619 - OH686_01620 0.42 -0.8 350,619 - OH686_01620 0.42 -1.3 350,619 - OH686_01620 0.42 +0.2 350,658 + OH686_01620 0.47 +0.5 350,658 + OH686_01620 0.47 -1.9 350,659 - OH686_01620 0.47 -0.1 350,659 - OH686_01620 0.47 -0.8 350,659 - OH686_01620 0.47 -0.2 350,659 - OH686_01620 0.47 -1.4 350,659 - OH686_01620 0.47 -0.6 350,808 + OH686_01620 0.65 -0.0 350,808 + OH686_01620 0.65 -0.3 350,808 + OH686_01620 0.65 +1.6 350,809 - OH686_01620 0.65 -0.1 350,809 - OH686_01620 0.65 -1.6 350,809 - OH686_01620 0.65 -0.7 350,809 - OH686_01620 0.65 -0.2 350,809 - OH686_01620 0.65 -1.5 350,853 + OH686_01620 0.70 +0.2 350,853 + OH686_01620 0.70 -0.7 350,853 + OH686_01620 0.70 -1.2 350,853 + OH686_01620 0.70 -0.6 350,854 - OH686_01620 0.70 -0.2 350,854 - OH686_01620 0.70 +2.7 350,854 - OH686_01620 0.70 -0.3 350,854 - OH686_01620 0.70 -0.6 350,895 + OH686_01620 0.75 +0.0 350,896 - OH686_01620 0.75 -0.7 350,896 - OH686_01620 0.75 -1.8 350,896 - OH686_01620 0.75 -1.5 350,896 - OH686_01620 0.75 -0.8 350,896 - OH686_01620 0.75 +0.5 350,929 + OH686_01620 0.79 +0.1 350,929 + OH686_01620 0.79 +0.1 350,929 + OH686_01620 0.79 -0.9 350,929 + OH686_01620 0.79 -1.3 350,930 - OH686_01620 0.79 +0.3 350,930 - OH686_01620 0.79 -1.2 350,930 - OH686_01620 0.79 -0.5 350,992 - OH686_01620 0.87 +0.1 350,992 - OH686_01620 0.87 -2.2 351,069 + -0.6 351,116 + -0.7 351,117 - -0.2 351,117 - -1.1 351,117 - +0.8 351,146 + +0.6 351,146 + -0.2 351,146 + +1.2 351,146 + -0.2 351,146 + +0.6 351,147 - -0.4 351,147 - +0.6 351,147 - -0.6 351,147 - +0.6 351,165 + -1.2 351,166 + +0.1 351,166 + +0.5 351,166 + -1.1 351,166 + +0.8 351,166 + -0.1 351,166 + -0.8 351,167 - +0.1 351,167 - -0.1 351,167 - -0.8 351,191 - +1.0 351,206 + +0.5 351,235 + +0.2 351,268 + -1.7 351,268 + -0.0 351,268 + +0.8 351,268 + -0.4 351,268 + -0.4 351,269 - +0.1 351,269 - -0.7 351,269 - -0.3 351,269 - +0.8 351,269 - -1.2 351,269 - -0.4 351,286 - -0.7 351,286 - -1.0 351,286 - +1.4 351,297 + +0.2 351,298 - +0.2 351,361 + -0.5 351,391 - OH686_01625 0.13 -0.4 351,391 - OH686_01625 0.13 +0.6 351,391 - OH686_01625 0.13 -0.2 351,397 + OH686_01625 0.13 +0.4 351,411 + OH686_01625 0.15 -0.0 351,411 + OH686_01625 0.15 +0.2 351,412 - OH686_01625 0.15 -0.4 351,458 - OH686_01625 0.20 -0.6 351,458 - OH686_01625 0.20 -1.5
Or see this region's nucleotide sequence