Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4502 and EX28DRAFT_4503 are separated by 2 nucleotides EX28DRAFT_4503 and EX28DRAFT_4504 are separated by 41 nucleotides EX28DRAFT_4504 and EX28DRAFT_4505 overlap by 4 nucleotides EX28DRAFT_4505 and EX28DRAFT_4506 are separated by 170 nucleotides
EX28DRAFT_4502: EX28DRAFT_4502 - twin arginine-targeting protein translocase TatB, at 68,954 to 69,496
_4502
EX28DRAFT_4503: EX28DRAFT_4503 - Twin arginine targeting (Tat) protein translocase TatC, at 69,499 to 70,269
_4503
EX28DRAFT_4504: EX28DRAFT_4504 - Mg-dependent DNase, at 70,311 to 71,093
_4504
EX28DRAFT_4505: EX28DRAFT_4505 - transcription elongation factor/antiterminator RfaH, at 71,090 to 71,581
_4505
EX28DRAFT_4506: EX28DRAFT_4506 - UbiD family decarboxylase, at 71,752 to 73,245
_4506
Position (kb) 70
71
72 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 69.494 kb on + strand at 69.506 kb on + strand at 69.506 kb on + strand at 69.506 kb on + strand at 69.507 kb on - strand at 69.507 kb on - strand at 69.507 kb on - strand at 69.622 kb on + strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.623 kb on - strand, within EX28DRAFT_4503 at 69.798 kb on + strand, within EX28DRAFT_4503 at 69.799 kb on - strand, within EX28DRAFT_4503 at 69.853 kb on + strand, within EX28DRAFT_4503 at 70.068 kb on + strand, within EX28DRAFT_4503 at 70.081 kb on + strand, within EX28DRAFT_4503 at 70.082 kb on - strand, within EX28DRAFT_4503 at 70.082 kb on - strand, within EX28DRAFT_4503 at 70.083 kb on + strand, within EX28DRAFT_4503 at 70.084 kb on - strand, within EX28DRAFT_4503 at 70.166 kb on - strand, within EX28DRAFT_4503 at 70.188 kb on - strand, within EX28DRAFT_4503 at 70.205 kb on - strand at 70.242 kb on + strand at 70.242 kb on + strand at 70.296 kb on + strand at 70.296 kb on + strand at 70.296 kb on + strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.297 kb on - strand at 70.605 kb on - strand, within EX28DRAFT_4504 at 70.685 kb on + strand, within EX28DRAFT_4504 at 70.818 kb on + strand, within EX28DRAFT_4504 at 70.927 kb on - strand, within EX28DRAFT_4504 at 70.944 kb on - strand, within EX28DRAFT_4504 at 70.983 kb on + strand, within EX28DRAFT_4504 at 71.092 kb on - strand at 71.116 kb on + strand at 71.130 kb on - strand at 71.161 kb on + strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.225 kb on - strand, within EX28DRAFT_4505 at 71.286 kb on + strand, within EX28DRAFT_4505 at 71.286 kb on + strand, within EX28DRAFT_4505 at 71.422 kb on - strand, within EX28DRAFT_4505 at 71.565 kb on - strand at 71.569 kb on - strand at 71.581 kb on + strand at 71.581 kb on + strand at 71.582 kb on - strand at 71.582 kb on - strand at 71.647 kb on + strand at 71.648 kb on - strand at 71.650 kb on - strand at 71.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 69,494 + -0.3 69,506 + +0.8 69,506 + -0.5 69,506 + -2.6 69,507 - -0.2 69,507 - -0.8 69,507 - -1.4 69,622 + EX28DRAFT_4503 0.16 +0.2 69,623 - EX28DRAFT_4503 0.16 -1.5 69,623 - EX28DRAFT_4503 0.16 -1.4 69,623 - EX28DRAFT_4503 0.16 +0.9 69,798 + EX28DRAFT_4503 0.39 -1.0 69,799 - EX28DRAFT_4503 0.39 -1.0 69,853 + EX28DRAFT_4503 0.46 -0.6 70,068 + EX28DRAFT_4503 0.74 -0.3 70,081 + EX28DRAFT_4503 0.75 +0.3 70,082 - EX28DRAFT_4503 0.76 -2.3 70,082 - EX28DRAFT_4503 0.76 -3.1 70,083 + EX28DRAFT_4503 0.76 -0.6 70,084 - EX28DRAFT_4503 0.76 -0.6 70,166 - EX28DRAFT_4503 0.87 -0.1 70,188 - EX28DRAFT_4503 0.89 +3.5 70,205 - -0.6 70,242 + +0.7 70,242 + +2.1 70,296 + +0.7 70,296 + +0.5 70,296 + +1.1 70,297 - +1.4 70,297 - +1.8 70,297 - -3.4 70,297 - -0.3 70,605 - EX28DRAFT_4504 0.38 +1.3 70,685 + EX28DRAFT_4504 0.48 -0.1 70,818 + EX28DRAFT_4504 0.65 +0.6 70,927 - EX28DRAFT_4504 0.79 +0.1 70,944 - EX28DRAFT_4504 0.81 -0.6 70,983 + EX28DRAFT_4504 0.86 +0.4 71,092 - +1.7 71,116 + +0.6 71,130 - +3.2 71,161 + EX28DRAFT_4505 0.14 -4.6 71,162 - EX28DRAFT_4505 0.15 -0.1 71,162 - EX28DRAFT_4505 0.15 -1.2 71,225 - EX28DRAFT_4505 0.27 -0.6 71,286 + EX28DRAFT_4505 0.40 -1.2 71,286 + EX28DRAFT_4505 0.40 -4.5 71,422 - EX28DRAFT_4505 0.67 -4.8 71,565 - -1.4 71,569 - -2.9 71,581 + +0.8 71,581 + -4.6 71,582 - -0.3 71,582 - +1.1 71,647 + +1.0 71,648 - -1.6 71,650 - -1.9 71,727 - -3.0
Or see this region's nucleotide sequence