Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4464 and EX28DRAFT_4465 are separated by 102 nucleotides EX28DRAFT_4465 and EX28DRAFT_4466 are separated by 67 nucleotides EX28DRAFT_4466 and EX28DRAFT_4467 are separated by 22 nucleotides EX28DRAFT_4467 and EX28DRAFT_4468 are separated by 46 nucleotides EX28DRAFT_4468 and EX28DRAFT_4469 are separated by 299 nucleotides EX28DRAFT_4469 and EX28DRAFT_4470 are separated by 5 nucleotides
EX28DRAFT_4464: EX28DRAFT_4464 - Gamma-aminobutyrate permease and related permeases, at 31,816 to 33,201
_4464
EX28DRAFT_4465: EX28DRAFT_4465 - tRNA, at 33,304 to 33,380
_4465
EX28DRAFT_4466: EX28DRAFT_4466 - tRNA, at 33,448 to 33,523
_4466
EX28DRAFT_4467: EX28DRAFT_4467 - tRNA, at 33,546 to 33,631
_4467
EX28DRAFT_4468: EX28DRAFT_4468 - tRNA, at 33,678 to 33,754
_4468
EX28DRAFT_4469: EX28DRAFT_4469 - RNA, at 34,054 to 34,256
_4469
EX28DRAFT_4470: EX28DRAFT_4470 - hypothetical protein, at 34,262 to 35,473
_4470
Position (kb) 33
34 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 32.712 kb on + strand, within EX28DRAFT_4464 at 32.713 kb on - strand, within EX28DRAFT_4464 at 32.725 kb on + strand, within EX28DRAFT_4464 at 32.726 kb on - strand, within EX28DRAFT_4464 at 32.726 kb on - strand, within EX28DRAFT_4464 at 32.740 kb on - strand, within EX28DRAFT_4464 at 32.747 kb on - strand, within EX28DRAFT_4464 at 32.787 kb on + strand, within EX28DRAFT_4464 at 32.899 kb on + strand, within EX28DRAFT_4464 at 32.900 kb on - strand, within EX28DRAFT_4464 at 32.900 kb on - strand, within EX28DRAFT_4464 at 33.037 kb on + strand, within EX28DRAFT_4464 at 33.037 kb on + strand, within EX28DRAFT_4464 at 33.038 kb on - strand, within EX28DRAFT_4464 at 33.069 kb on - strand at 33.085 kb on - strand at 33.148 kb on + strand at 33.150 kb on + strand at 33.150 kb on + strand at 33.151 kb on - strand at 33.151 kb on - strand at 33.151 kb on - strand at 33.525 kb on + strand at 33.587 kb on + strand, within EX28DRAFT_4467 at 33.891 kb on - strand at 33.891 kb on - strand at 34.044 kb on + strand at 34.055 kb on + strand at 34.055 kb on + strand at 34.055 kb on + strand at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.075 kb on + strand, within EX28DRAFT_4469 at 34.076 kb on - strand, within EX28DRAFT_4469 at 34.076 kb on - strand, within EX28DRAFT_4469 at 34.123 kb on + strand, within EX28DRAFT_4469 at 34.203 kb on + strand, within EX28DRAFT_4469 at 34.203 kb on + strand, within EX28DRAFT_4469 at 34.204 kb on - strand, within EX28DRAFT_4469 at 34.204 kb on - strand, within EX28DRAFT_4469 at 34.240 kb on - strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.323 kb on + strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.324 kb on - strand at 34.325 kb on + strand at 34.334 kb on + strand at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.529 kb on + strand, within EX28DRAFT_4470 at 34.530 kb on - strand, within EX28DRAFT_4470 at 34.596 kb on - strand, within EX28DRAFT_4470
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 32,712 + EX28DRAFT_4464 0.65 +0.5 32,713 - EX28DRAFT_4464 0.65 -0.6 32,725 + EX28DRAFT_4464 0.66 -4.4 32,726 - EX28DRAFT_4464 0.66 -0.5 32,726 - EX28DRAFT_4464 0.66 -0.3 32,740 - EX28DRAFT_4464 0.67 +2.1 32,747 - EX28DRAFT_4464 0.67 +0.7 32,787 + EX28DRAFT_4464 0.70 -0.5 32,899 + EX28DRAFT_4464 0.78 +0.7 32,900 - EX28DRAFT_4464 0.78 +0.9 32,900 - EX28DRAFT_4464 0.78 -1.4 33,037 + EX28DRAFT_4464 0.88 +0.5 33,037 + EX28DRAFT_4464 0.88 +0.2 33,038 - EX28DRAFT_4464 0.88 -1.2 33,069 - -0.3 33,085 - -0.3 33,148 + -0.5 33,150 + -0.9 33,150 + +1.3 33,151 - +0.2 33,151 - +0.3 33,151 - -0.3 33,525 + -1.1 33,587 + EX28DRAFT_4467 0.48 +0.4 33,891 - +0.6 33,891 - -2.7 34,044 + -1.0 34,055 + -0.1 34,055 + +0.4 34,055 + +2.2 34,075 + EX28DRAFT_4469 0.10 +1.0 34,075 + EX28DRAFT_4469 0.10 -0.1 34,075 + EX28DRAFT_4469 0.10 +1.2 34,075 + EX28DRAFT_4469 0.10 +0.3 34,075 + EX28DRAFT_4469 0.10 -3.9 34,076 - EX28DRAFT_4469 0.11 -0.7 34,076 - EX28DRAFT_4469 0.11 -0.2 34,123 + EX28DRAFT_4469 0.34 -2.8 34,203 + EX28DRAFT_4469 0.73 -0.2 34,203 + EX28DRAFT_4469 0.73 -1.0 34,204 - EX28DRAFT_4469 0.74 -0.1 34,204 - EX28DRAFT_4469 0.74 -2.7 34,240 - -1.7 34,323 + +1.4 34,323 + +0.5 34,323 + +0.4 34,323 + -2.2 34,324 - -2.0 34,324 - +0.1 34,324 - -0.7 34,324 - +1.4 34,325 + +0.3 34,334 + +2.1 34,529 + EX28DRAFT_4470 0.22 +0.2 34,529 + EX28DRAFT_4470 0.22 -0.2 34,529 + EX28DRAFT_4470 0.22 +0.3 34,530 - EX28DRAFT_4470 0.22 +0.2 34,596 - EX28DRAFT_4470 0.28 -2.3
Or see this region's nucleotide sequence