Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4403

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4401 and EX28DRAFT_4402 are separated by 83 nucleotidesEX28DRAFT_4402 and EX28DRAFT_4403 are separated by 92 nucleotidesEX28DRAFT_4403 and EX28DRAFT_4404 are separated by 68 nucleotides EX28DRAFT_4401: EX28DRAFT_4401 - Uncharacterized protein conserved in bacteria, at 64,313 to 64,552 _4401 EX28DRAFT_4402: EX28DRAFT_4402 - regulator of ribonuclease activity A, at 64,636 to 65,121 _4402 EX28DRAFT_4403: EX28DRAFT_4403 - 1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74), at 65,214 to 66,134 _4403 EX28DRAFT_4404: EX28DRAFT_4404 - ATP-dependent protease HslVU, ATPase subunit, at 66,203 to 67,537 _4404 Position (kb) 65 66 67Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 64.243 kb on + strandat 64.243 kb on + strandat 64.244 kb on - strandat 64.244 kb on - strandat 64.244 kb on - strandat 64.255 kb on + strandat 64.256 kb on - strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.258 kb on - strandat 64.258 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.306 kb on + strandat 64.306 kb on + strandat 64.307 kb on - strandat 64.307 kb on - strandat 64.320 kb on + strandat 64.321 kb on - strandat 64.537 kb on + strandat 64.567 kb on + strandat 64.567 kb on + strandat 64.578 kb on + strandat 64.578 kb on + strandat 64.579 kb on - strandat 64.637 kb on + strandat 64.638 kb on - strandat 64.688 kb on + strand, within EX28DRAFT_4402at 64.688 kb on + strand, within EX28DRAFT_4402at 64.689 kb on - strand, within EX28DRAFT_4402at 64.903 kb on + strand, within EX28DRAFT_4402at 64.903 kb on + strand, within EX28DRAFT_4402at 64.904 kb on - strand, within EX28DRAFT_4402at 64.976 kb on + strand, within EX28DRAFT_4402at 64.977 kb on - strand, within EX28DRAFT_4402at 65.087 kb on + strandat 65.088 kb on - strandat 65.115 kb on - strandat 65.156 kb on + strandat 65.156 kb on + strandat 65.157 kb on - strandat 65.158 kb on + strandat 65.159 kb on - strandat 65.159 kb on - strandat 65.215 kb on + strandat 65.319 kb on - strand, within EX28DRAFT_4403at 65.612 kb on + strand, within EX28DRAFT_4403at 65.613 kb on - strand, within EX28DRAFT_4403at 65.626 kb on + strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.691 kb on - strand, within EX28DRAFT_4403at 65.692 kb on + strand, within EX28DRAFT_4403at 65.692 kb on + strand, within EX28DRAFT_4403at 65.693 kb on - strand, within EX28DRAFT_4403at 65.693 kb on - strand, within EX28DRAFT_4403at 65.698 kb on + strand, within EX28DRAFT_4403at 65.719 kb on + strand, within EX28DRAFT_4403at 65.720 kb on - strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.786 kb on + strand, within EX28DRAFT_4403at 65.840 kb on + strand, within EX28DRAFT_4403at 65.870 kb on + strand, within EX28DRAFT_4403at 65.905 kb on - strand, within EX28DRAFT_4403at 66.134 kb on + strandat 66.134 kb on + strandat 66.135 kb on - strandat 66.135 kb on - strandat 66.138 kb on + strandat 66.138 kb on + strandat 66.138 kb on + strandat 66.139 kb on - strandat 66.206 kb on + strandat 66.206 kb on + strandat 66.206 kb on + strandat 66.207 kb on - strandat 66.212 kb on - strandat 66.264 kb on + strandat 66.264 kb on + strandat 66.313 kb on - strandat 66.313 kb on - strandat 66.320 kb on - strandat 66.410 kb on - strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.471 kb on + strand, within EX28DRAFT_4404at 66.472 kb on - strand, within EX28DRAFT_4404at 66.472 kb on - strand, within EX28DRAFT_4404at 66.476 kb on + strand, within EX28DRAFT_4404at 66.477 kb on - strand, within EX28DRAFT_4404at 66.477 kb on - strand, within EX28DRAFT_4404at 66.509 kb on - strand, within EX28DRAFT_4404at 66.874 kb on + strand, within EX28DRAFT_4404at 66.875 kb on - strand, within EX28DRAFT_4404

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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64,243 + -2.5
64,243 + +0.7
64,244 - -1.4
64,244 - +0.9
64,244 - -0.3
64,255 + -2.2
64,256 - -0.1
64,257 + +0.4
64,257 + +0.4
64,257 + -0.7
64,257 + +0.7
64,258 - -0.8
64,258 - -0.9
64,273 - -0.2
64,273 - -0.1
64,306 + +0.6
64,306 + +0.4
64,307 - -2.6
64,307 - +0.8
64,320 + +0.2
64,321 - -0.4
64,537 + +1.0
64,567 + -0.4
64,567 + +1.7
64,578 + -0.7
64,578 + +0.8
64,579 - +0.4
64,637 + -0.4
64,638 - +0.1
64,688 + EX28DRAFT_4402 0.11 +0.2
64,688 + EX28DRAFT_4402 0.11 -3.8
64,689 - EX28DRAFT_4402 0.11 +0.4
64,903 + EX28DRAFT_4402 0.55 +0.3
64,903 + EX28DRAFT_4402 0.55 -2.1
64,904 - EX28DRAFT_4402 0.55 +0.9
64,976 + EX28DRAFT_4402 0.70 -3.1
64,977 - EX28DRAFT_4402 0.70 -0.0
65,087 + -0.1
65,088 - +0.0
65,115 - +1.8
65,156 + -0.2
65,156 + +0.5
65,157 - +0.1
65,158 + +0.5
65,159 - -0.9
65,159 - -0.4
65,215 + -0.5
65,319 - EX28DRAFT_4403 0.11 -0.1
65,612 + EX28DRAFT_4403 0.43 -0.1
65,613 - EX28DRAFT_4403 0.43 +1.2
65,626 + EX28DRAFT_4403 0.45 +1.5
65,691 - EX28DRAFT_4403 0.52 -0.3
65,691 - EX28DRAFT_4403 0.52 -0.6
65,691 - EX28DRAFT_4403 0.52 -1.8
65,692 + EX28DRAFT_4403 0.52 +0.4
65,692 + EX28DRAFT_4403 0.52 +0.9
65,693 - EX28DRAFT_4403 0.52 +0.2
65,693 - EX28DRAFT_4403 0.52 -0.7
65,698 + EX28DRAFT_4403 0.53 -2.2
65,719 + EX28DRAFT_4403 0.55 -0.8
65,720 - EX28DRAFT_4403 0.55 -0.3
65,786 + EX28DRAFT_4403 0.62 +0.7
65,786 + EX28DRAFT_4403 0.62 -2.9
65,786 + EX28DRAFT_4403 0.62 +0.7
65,840 + EX28DRAFT_4403 0.68 +1.2
65,870 + EX28DRAFT_4403 0.71 +1.6
65,905 - EX28DRAFT_4403 0.75 -0.5
66,134 + -1.4
66,134 + -1.8
66,135 - -1.8
66,135 - -1.4
66,138 + +0.7
66,138 + -0.2
66,138 + -0.4
66,139 - +0.5
66,206 + -1.3
66,206 + +1.8
66,206 + -0.6
66,207 - -1.8
66,212 - -0.9
66,264 + -0.6
66,264 + -2.1
66,313 - -0.3
66,313 - +0.1
66,320 - +1.5
66,410 - EX28DRAFT_4404 0.16 +1.3
66,471 + EX28DRAFT_4404 0.20 -4.6
66,471 + EX28DRAFT_4404 0.20 -1.1
66,471 + EX28DRAFT_4404 0.20 -1.3
66,472 - EX28DRAFT_4404 0.20 +0.8
66,472 - EX28DRAFT_4404 0.20 -1.1
66,476 + EX28DRAFT_4404 0.20 +0.9
66,477 - EX28DRAFT_4404 0.21 -0.6
66,477 - EX28DRAFT_4404 0.21 +0.5
66,509 - EX28DRAFT_4404 0.23 -0.5
66,874 + EX28DRAFT_4404 0.50 +1.7
66,875 - EX28DRAFT_4404 0.50 +0.4

Or see this region's nucleotide sequence