Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4276 and EX28DRAFT_4277 are separated by 41 nucleotides EX28DRAFT_4277 and EX28DRAFT_4278 are separated by 149 nucleotides EX28DRAFT_4278 and EX28DRAFT_4279 are separated by 88 nucleotides EX28DRAFT_4279 and EX28DRAFT_4280 are separated by 123 nucleotides EX28DRAFT_4280 and EX28DRAFT_4281 overlap by 17 nucleotides
EX28DRAFT_4276: EX28DRAFT_4276 - Predicted dehydrogenases and related proteins, at 81,041 to 82,078
_4276
EX28DRAFT_4277: EX28DRAFT_4277 - RNA, at 82,120 to 82,185
_4277
EX28DRAFT_4278: EX28DRAFT_4278 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 82,335 to 82,823
_4278
EX28DRAFT_4279: EX28DRAFT_4279 - gamma-glutamyltranspeptidase, at 82,912 to 84,657
_4279
EX28DRAFT_4280: EX28DRAFT_4280 - Protein of unknown function (DUF2756), at 84,781 to 85,158
_4280
EX28DRAFT_4281: EX28DRAFT_4281 - Glycerophosphoryl diester phosphodiesterase, at 85,142 to 85,888
_4281
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 81.937 kb on - strand, within EX28DRAFT_4276 at 82.018 kb on - strand at 82.018 kb on - strand at 82.058 kb on - strand at 82.071 kb on - strand at 82.071 kb on - strand at 82.135 kb on - strand, within EX28DRAFT_4277 at 82.150 kb on + strand, within EX28DRAFT_4277 at 82.150 kb on + strand, within EX28DRAFT_4277 at 82.151 kb on - strand, within EX28DRAFT_4277 at 82.153 kb on + strand, within EX28DRAFT_4277 at 82.330 kb on - strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.414 kb on - strand, within EX28DRAFT_4278 at 82.414 kb on - strand, within EX28DRAFT_4278 at 82.508 kb on - strand, within EX28DRAFT_4278 at 82.650 kb on - strand, within EX28DRAFT_4278 at 82.725 kb on + strand, within EX28DRAFT_4278 at 82.726 kb on - strand, within EX28DRAFT_4278 at 82.789 kb on - strand at 82.792 kb on + strand at 82.792 kb on + strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.793 kb on - strand at 82.800 kb on + strand at 82.804 kb on - strand at 82.804 kb on - strand at 82.804 kb on - strand at 82.804 kb on - strand at 82.804 kb on - strand at 82.805 kb on + strand at 82.821 kb on + strand at 82.822 kb on - strand at 82.875 kb on + strand at 82.917 kb on - strand at 83.187 kb on + strand, within EX28DRAFT_4279 at 83.188 kb on - strand, within EX28DRAFT_4279 at 83.193 kb on + strand, within EX28DRAFT_4279 at 83.193 kb on + strand, within EX28DRAFT_4279 at 83.265 kb on + strand, within EX28DRAFT_4279 at 83.266 kb on - strand, within EX28DRAFT_4279 at 83.266 kb on - strand, within EX28DRAFT_4279 at 83.266 kb on - strand, within EX28DRAFT_4279 at 83.570 kb on + strand, within EX28DRAFT_4279 at 83.580 kb on - strand, within EX28DRAFT_4279 at 83.580 kb on - strand, within EX28DRAFT_4279 at 83.928 kb on - strand, within EX28DRAFT_4279 at 84.075 kb on - strand, within EX28DRAFT_4279 at 84.075 kb on - strand, within EX28DRAFT_4279 at 84.107 kb on - strand, within EX28DRAFT_4279 at 84.695 kb on + strand at 84.715 kb on + strand at 84.745 kb on + strand at 84.871 kb on + strand, within EX28DRAFT_4280 at 84.872 kb on - strand, within EX28DRAFT_4280 at 84.942 kb on + strand, within EX28DRAFT_4280 at 85.137 kb on + strand at 85.143 kb on + strand at 85.143 kb on + strand at 85.144 kb on - strand at 85.156 kb on + strand at 85.252 kb on - strand, within EX28DRAFT_4281 at 85.262 kb on - strand, within EX28DRAFT_4281
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 81,937 - EX28DRAFT_4276 0.86 +0.5 82,018 - +1.2 82,018 - -0.2 82,058 - +0.2 82,071 - +0.1 82,071 - +0.5 82,135 - EX28DRAFT_4277 0.23 -1.1 82,150 + EX28DRAFT_4277 0.45 -0.2 82,150 + EX28DRAFT_4277 0.45 +0.7 82,151 - EX28DRAFT_4277 0.47 +0.3 82,153 + EX28DRAFT_4277 0.50 +0.3 82,330 - +0.3 82,345 + -0.3 82,345 + -0.1 82,414 - EX28DRAFT_4278 0.16 -2.5 82,414 - EX28DRAFT_4278 0.16 +0.1 82,508 - EX28DRAFT_4278 0.35 -1.0 82,650 - EX28DRAFT_4278 0.64 +0.1 82,725 + EX28DRAFT_4278 0.80 +1.8 82,726 - EX28DRAFT_4278 0.80 -1.3 82,789 - -0.1 82,792 + +0.5 82,792 + -0.2 82,793 - -0.4 82,793 - +0.2 82,793 - +0.0 82,793 - +0.3 82,793 - +4.6 82,793 - +0.5 82,793 - -0.3 82,793 - +0.9 82,800 + +0.6 82,804 - +0.9 82,804 - -0.8 82,804 - -0.0 82,804 - -2.0 82,804 - -0.0 82,805 + +0.9 82,821 + +0.6 82,822 - -4.7 82,875 + -0.3 82,917 - +3.3 83,187 + EX28DRAFT_4279 0.16 -0.5 83,188 - EX28DRAFT_4279 0.16 +1.3 83,193 + EX28DRAFT_4279 0.16 +2.0 83,193 + EX28DRAFT_4279 0.16 +0.2 83,265 + EX28DRAFT_4279 0.20 -0.1 83,266 - EX28DRAFT_4279 0.20 +1.2 83,266 - EX28DRAFT_4279 0.20 +1.0 83,266 - EX28DRAFT_4279 0.20 +0.8 83,570 + EX28DRAFT_4279 0.38 +0.2 83,580 - EX28DRAFT_4279 0.38 -2.2 83,580 - EX28DRAFT_4279 0.38 -0.3 83,928 - EX28DRAFT_4279 0.58 +0.7 84,075 - EX28DRAFT_4279 0.67 +1.0 84,075 - EX28DRAFT_4279 0.67 +0.1 84,107 - EX28DRAFT_4279 0.68 -0.8 84,695 + +1.2 84,715 + -1.7 84,745 + +0.8 84,871 + EX28DRAFT_4280 0.24 +0.1 84,872 - EX28DRAFT_4280 0.24 +0.2 84,942 + EX28DRAFT_4280 0.43 -2.2 85,137 + -0.2 85,143 + -0.2 85,143 + -1.2 85,144 - +1.7 85,156 + +1.0 85,252 - EX28DRAFT_4281 0.15 -3.1 85,262 - EX28DRAFT_4281 0.16 +0.2
Or see this region's nucleotide sequence