Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotides EX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotides
EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910
_4221
EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729
_4222
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
Position (kb) 29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 28.488 kb on + strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.562 kb on + strand, within EX28DRAFT_4221 at 28.797 kb on + strand, within EX28DRAFT_4221 at 28.798 kb on - strand, within EX28DRAFT_4221 at 28.892 kb on + strand at 28.913 kb on + strand at 28.931 kb on + strand at 28.942 kb on + strand at 28.964 kb on + strand at 28.985 kb on - strand at 29.108 kb on + strand at 29.108 kb on + strand at 29.109 kb on - strand at 29.294 kb on + strand, within EX28DRAFT_4222 at 29.343 kb on + strand, within EX28DRAFT_4222 at 29.437 kb on - strand, within EX28DRAFT_4222 at 29.439 kb on - strand, within EX28DRAFT_4222 at 29.441 kb on - strand, within EX28DRAFT_4222 at 29.444 kb on + strand, within EX28DRAFT_4222 at 29.445 kb on - strand, within EX28DRAFT_4222 at 29.484 kb on + strand, within EX28DRAFT_4222 at 29.489 kb on - strand, within EX28DRAFT_4222 at 29.637 kb on + strand, within EX28DRAFT_4222 at 29.638 kb on - strand, within EX28DRAFT_4222 at 29.770 kb on + strand at 29.849 kb on - strand at 29.933 kb on - strand, within EX28DRAFT_4223 at 29.939 kb on + strand, within EX28DRAFT_4223 at 29.984 kb on - strand, within EX28DRAFT_4223 at 30.097 kb on + strand, within EX28DRAFT_4223 at 30.102 kb on + strand, within EX28DRAFT_4223 at 30.103 kb on - strand, within EX28DRAFT_4223 at 30.340 kb on - strand, within EX28DRAFT_4223 at 30.421 kb on - strand, within EX28DRAFT_4223 at 30.496 kb on + strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.557 kb on - strand, within EX28DRAFT_4223
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 28,488 + EX28DRAFT_4221 0.58 +0.4 28,489 - EX28DRAFT_4221 0.58 +0.7 28,489 - EX28DRAFT_4221 0.58 -2.4 28,562 + EX28DRAFT_4221 0.66 +0.6 28,797 + EX28DRAFT_4221 0.89 +0.3 28,798 - EX28DRAFT_4221 0.89 -0.7 28,892 + +0.0 28,913 + -1.4 28,931 + +0.9 28,942 + +0.3 28,964 + +0.1 28,985 - -0.4 29,108 + -0.1 29,108 + +0.6 29,109 - +0.4 29,294 + EX28DRAFT_4222 0.25 +1.6 29,343 + EX28DRAFT_4222 0.33 +2.2 29,437 - EX28DRAFT_4222 0.49 +1.7 29,439 - EX28DRAFT_4222 0.50 -0.2 29,441 - EX28DRAFT_4222 0.50 -0.7 29,444 + EX28DRAFT_4222 0.51 -0.8 29,445 - EX28DRAFT_4222 0.51 -0.4 29,484 + EX28DRAFT_4222 0.58 +0.5 29,489 - EX28DRAFT_4222 0.58 -1.0 29,637 + EX28DRAFT_4222 0.84 +0.3 29,638 - EX28DRAFT_4222 0.84 +1.2 29,770 + -1.5 29,849 - -0.6 29,933 - EX28DRAFT_4223 0.16 +0.4 29,939 + EX28DRAFT_4223 0.17 +0.8 29,984 - EX28DRAFT_4223 0.20 -1.3 30,097 + EX28DRAFT_4223 0.30 -1.8 30,102 + EX28DRAFT_4223 0.30 +0.2 30,103 - EX28DRAFT_4223 0.30 -0.3 30,340 - EX28DRAFT_4223 0.50 -2.2 30,421 - EX28DRAFT_4223 0.56 -0.4 30,496 + EX28DRAFT_4223 0.63 +0.4 30,519 - EX28DRAFT_4223 0.65 -3.8 30,519 - EX28DRAFT_4223 0.65 -0.3 30,557 - EX28DRAFT_4223 0.68 +0.7
Or see this region's nucleotide sequence