Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4153 and EX28DRAFT_4154 are separated by 92 nucleotides EX28DRAFT_4154 and EX28DRAFT_4155 are separated by 67 nucleotides EX28DRAFT_4155 and EX28DRAFT_4156 are separated by 41 nucleotides
EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998
_4153
EX28DRAFT_4154: EX28DRAFT_4154 - Uncharacterized protein conserved in bacteria, at 135,091 to 136,407
_4154
EX28DRAFT_4155: EX28DRAFT_4155 - DNA adenine methylase (dam), at 136,475 to 137,287
_4155
EX28DRAFT_4156: EX28DRAFT_4156 - ribulose-phosphate 3-epimerase, at 137,329 to 138,006
_4156
Position (kb) 135
136
137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 134.479 kb on + strand, within EX28DRAFT_4153 at 134.518 kb on + strand, within EX28DRAFT_4153 at 134.519 kb on - strand, within EX28DRAFT_4153 at 134.650 kb on + strand, within EX28DRAFT_4153 at 134.852 kb on + strand, within EX28DRAFT_4153 at 135.068 kb on + strand at 135.379 kb on - strand, within EX28DRAFT_4154 at 135.671 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154 at 136.162 kb on + strand, within EX28DRAFT_4154 at 136.192 kb on + strand, within EX28DRAFT_4154 at 136.192 kb on + strand, within EX28DRAFT_4154 at 136.276 kb on + strand at 136.276 kb on + strand at 136.297 kb on + strand at 136.297 kb on + strand at 136.300 kb on - strand at 136.300 kb on - strand at 136.406 kb on - strand at 136.459 kb on + strand at 136.459 kb on + strand at 136.537 kb on + strand at 136.624 kb on + strand, within EX28DRAFT_4155 at 136.847 kb on + strand, within EX28DRAFT_4155 at 136.979 kb on - strand, within EX28DRAFT_4155 at 137.009 kb on + strand, within EX28DRAFT_4155 at 137.171 kb on - strand, within EX28DRAFT_4155 at 137.183 kb on + strand, within EX28DRAFT_4155 at 137.222 kb on - strand at 137.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 134,479 + EX28DRAFT_4153 0.52 +1.8 134,518 + EX28DRAFT_4153 0.56 +0.8 134,519 - EX28DRAFT_4153 0.56 -0.1 134,650 + EX28DRAFT_4153 0.68 -1.0 134,852 + EX28DRAFT_4153 0.87 +3.0 135,068 + -1.5 135,379 - EX28DRAFT_4154 0.22 -3.2 135,671 + EX28DRAFT_4154 0.44 -0.3 135,867 + EX28DRAFT_4154 0.59 -2.4 135,867 + EX28DRAFT_4154 0.59 -0.4 136,162 + EX28DRAFT_4154 0.81 -0.9 136,192 + EX28DRAFT_4154 0.84 -0.5 136,192 + EX28DRAFT_4154 0.84 -1.9 136,276 + -0.1 136,276 + -0.1 136,297 + -1.6 136,297 + -1.0 136,300 - -1.0 136,300 - -0.5 136,406 - -2.4 136,459 + -0.2 136,459 + +1.6 136,537 + -2.3 136,624 + EX28DRAFT_4155 0.18 -1.3 136,847 + EX28DRAFT_4155 0.46 -3.0 136,979 - EX28DRAFT_4155 0.62 -1.9 137,009 + EX28DRAFT_4155 0.66 -0.5 137,171 - EX28DRAFT_4155 0.86 -3.9 137,183 + EX28DRAFT_4155 0.87 -2.3 137,222 - -3.4 137,228 - +0.2
Or see this region's nucleotide sequence