Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4132

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4130 and EX28DRAFT_4131 are separated by 111 nucleotidesEX28DRAFT_4131 and EX28DRAFT_4132 are separated by 33 nucleotidesEX28DRAFT_4132 and EX28DRAFT_4133 are separated by 10 nucleotides EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041 _4130 EX28DRAFT_4131: EX28DRAFT_4131 - Protein of unknown function (DUF1471), at 111,153 to 111,422 _4131 EX28DRAFT_4132: EX28DRAFT_4132 - FeoC like transcriptional regulator, at 111,456 to 111,692 _4132 EX28DRAFT_4133: EX28DRAFT_4133 - ferrous iron transporter FeoB, at 111,703 to 114,021 _4133 Position (kb) 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 110.687 kb on - strand, within EX28DRAFT_4130at 110.870 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.981 kb on + strandat 110.981 kb on + strandat 110.982 kb on - strandat 111.085 kb on - strandat 111.114 kb on + strandat 111.354 kb on + strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.358 kb on - strand, within EX28DRAFT_4131at 111.414 kb on + strandat 111.414 kb on + strandat 111.415 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.423 kb on + strandat 111.424 kb on - strandat 111.480 kb on + strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.840 kb on + strandat 111.840 kb on + strandat 111.919 kb on + strandat 112.022 kb on + strand, within EX28DRAFT_4133at 112.022 kb on + strand, within EX28DRAFT_4133at 112.028 kb on + strand, within EX28DRAFT_4133at 112.401 kb on + strand, within EX28DRAFT_4133at 112.548 kb on - strand, within EX28DRAFT_4133at 112.623 kb on + strand, within EX28DRAFT_4133

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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110,687 - EX28DRAFT_4130 0.54 -0.5
110,870 + EX28DRAFT_4130 0.78 -2.3
110,874 + EX28DRAFT_4130 0.78 +0.4
110,874 + EX28DRAFT_4130 0.78 -2.7
110,875 - EX28DRAFT_4130 0.78 -1.2
110,875 - EX28DRAFT_4130 0.78 +1.2
110,875 - EX28DRAFT_4130 0.78 -0.5
110,875 - EX28DRAFT_4130 0.78 -1.2
110,981 + +0.9
110,981 + -0.1
110,982 - -4.0
111,085 - +0.0
111,114 + -0.3
111,354 + EX28DRAFT_4131 0.74 +0.3
111,355 - EX28DRAFT_4131 0.75 -0.8
111,355 - EX28DRAFT_4131 0.75 +0.9
111,357 + EX28DRAFT_4131 0.76 -0.9
111,357 + EX28DRAFT_4131 0.76 -0.0
111,357 + EX28DRAFT_4131 0.76 -0.1
111,358 - EX28DRAFT_4131 0.76 +0.9
111,414 + -0.0
111,414 + +0.8
111,415 - -0.8
111,421 - +0.7
111,421 - -0.6
111,421 - +0.8
111,421 - -1.1
111,423 + +1.8
111,424 - -0.3
111,480 + EX28DRAFT_4132 0.10 +0.5
111,510 - EX28DRAFT_4132 0.23 +0.2
111,510 - EX28DRAFT_4132 0.23 +0.5
111,510 - EX28DRAFT_4132 0.23 -0.6
111,840 + -0.2
111,840 + +0.5
111,919 + -2.2
112,022 + EX28DRAFT_4133 0.14 +0.4
112,022 + EX28DRAFT_4133 0.14 +0.5
112,028 + EX28DRAFT_4133 0.14 -0.3
112,401 + EX28DRAFT_4133 0.30 +0.0
112,548 - EX28DRAFT_4133 0.36 +1.3
112,623 + EX28DRAFT_4133 0.40 +0.8

Or see this region's nucleotide sequence