Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4066 and EX28DRAFT_4067 are separated by 43 nucleotides EX28DRAFT_4067 and EX28DRAFT_4068 overlap by 23 nucleotides EX28DRAFT_4068 and EX28DRAFT_4069 are separated by 175 nucleotides
EX28DRAFT_4066: EX28DRAFT_4066 - Universal stress protein B (UspB), at 42,065 to 42,400
_4066
EX28DRAFT_4067: EX28DRAFT_4067 - hypothetical protein, at 42,444 to 42,851
_4067
EX28DRAFT_4068: EX28DRAFT_4068 - Putative toxin 60, at 42,829 to 43,218
_4068
EX28DRAFT_4069: EX28DRAFT_4069 - Phosphate transporter family, at 43,394 to 44,893
_4069
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 41.856 kb on + strand at 41.857 kb on - strand at 41.862 kb on + strand at 41.863 kb on - strand at 41.950 kb on - strand at 41.953 kb on - strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.065 kb on - strand at 42.065 kb on - strand at 42.112 kb on - strand, within EX28DRAFT_4066 at 42.128 kb on + strand, within EX28DRAFT_4066 at 42.130 kb on + strand, within EX28DRAFT_4066 at 42.160 kb on - strand, within EX28DRAFT_4066 at 42.191 kb on + strand, within EX28DRAFT_4066 at 42.257 kb on + strand, within EX28DRAFT_4066 at 42.258 kb on - strand, within EX28DRAFT_4066 at 42.263 kb on + strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.267 kb on - strand, within EX28DRAFT_4066 at 42.301 kb on + strand, within EX28DRAFT_4066 at 42.302 kb on - strand, within EX28DRAFT_4066 at 42.476 kb on + strand at 42.476 kb on + strand at 42.476 kb on + strand at 42.477 kb on - strand at 42.509 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.650 kb on - strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.693 kb on - strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067 at 42.809 kb on + strand, within EX28DRAFT_4067 at 42.810 kb on - strand, within EX28DRAFT_4067 at 42.851 kb on + strand at 42.851 kb on + strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.856 kb on + strand at 42.942 kb on + strand, within EX28DRAFT_4068 at 42.943 kb on - strand, within EX28DRAFT_4068 at 42.996 kb on + strand, within EX28DRAFT_4068 at 43.033 kb on - strand, within EX28DRAFT_4068 at 43.065 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.132 kb on - strand, within EX28DRAFT_4068 at 43.167 kb on + strand, within EX28DRAFT_4068 at 43.218 kb on + strand at 43.219 kb on - strand at 43.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 41,856 + -1.6 41,857 - -2.9 41,862 + +0.2 41,863 - -0.3 41,950 - +1.8 41,953 - -0.6 42,064 + +0.2 42,064 + +0.3 42,064 + +0.0 42,064 + -0.2 42,064 + -0.3 42,065 - -3.5 42,065 - -0.7 42,112 - EX28DRAFT_4066 0.14 -1.0 42,128 + EX28DRAFT_4066 0.19 +1.7 42,130 + EX28DRAFT_4066 0.19 -0.1 42,160 - EX28DRAFT_4066 0.28 -0.1 42,191 + EX28DRAFT_4066 0.38 +1.0 42,257 + EX28DRAFT_4066 0.57 -3.4 42,258 - EX28DRAFT_4066 0.57 -2.0 42,263 + EX28DRAFT_4066 0.59 -1.6 42,264 - EX28DRAFT_4066 0.59 +0.8 42,264 - EX28DRAFT_4066 0.59 -1.4 42,267 - EX28DRAFT_4066 0.60 -0.1 42,301 + EX28DRAFT_4066 0.70 +1.7 42,302 - EX28DRAFT_4066 0.71 +0.4 42,476 + +0.2 42,476 + -0.5 42,476 + -3.0 42,477 - +1.2 42,509 - EX28DRAFT_4067 0.16 -0.0 42,534 - EX28DRAFT_4067 0.22 +0.4 42,534 - EX28DRAFT_4067 0.22 -0.7 42,605 + EX28DRAFT_4067 0.39 -1.5 42,605 + EX28DRAFT_4067 0.39 +0.2 42,606 - EX28DRAFT_4067 0.40 -0.7 42,606 - EX28DRAFT_4067 0.40 +0.6 42,606 - EX28DRAFT_4067 0.40 -0.5 42,640 + EX28DRAFT_4067 0.48 +3.0 42,640 + EX28DRAFT_4067 0.48 -0.3 42,641 - EX28DRAFT_4067 0.48 +0.4 42,641 - EX28DRAFT_4067 0.48 +1.0 42,641 - EX28DRAFT_4067 0.48 -1.0 42,650 - EX28DRAFT_4067 0.50 +0.3 42,692 + EX28DRAFT_4067 0.61 +1.0 42,692 + EX28DRAFT_4067 0.61 -2.2 42,693 - EX28DRAFT_4067 0.61 +0.7 42,694 + EX28DRAFT_4067 0.61 -0.6 42,694 + EX28DRAFT_4067 0.61 -0.9 42,732 + EX28DRAFT_4067 0.71 -0.1 42,732 + EX28DRAFT_4067 0.71 -1.0 42,809 + EX28DRAFT_4067 0.89 -4.0 42,810 - EX28DRAFT_4067 0.90 -0.5 42,851 + +1.1 42,851 + +0.7 42,852 - -0.4 42,852 - +0.4 42,852 - +0.3 42,852 - -1.6 42,856 + -0.6 42,942 + EX28DRAFT_4068 0.29 -1.3 42,943 - EX28DRAFT_4068 0.29 +0.1 42,996 + EX28DRAFT_4068 0.43 -1.8 43,033 - EX28DRAFT_4068 0.52 +0.0 43,065 + EX28DRAFT_4068 0.61 -0.9 43,112 + EX28DRAFT_4068 0.73 -0.5 43,112 + EX28DRAFT_4068 0.73 -2.3 43,112 + EX28DRAFT_4068 0.73 -0.9 43,112 + EX28DRAFT_4068 0.73 +0.8 43,112 + EX28DRAFT_4068 0.73 -0.3 43,132 - EX28DRAFT_4068 0.78 +0.0 43,167 + EX28DRAFT_4068 0.87 -0.5 43,218 + -0.4 43,219 - -1.5 43,344 - -0.5
Or see this region's nucleotide sequence