Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4054 and EX28DRAFT_4055 are separated by 260 nucleotides EX28DRAFT_4055 and EX28DRAFT_4056 are separated by 52 nucleotides
EX28DRAFT_4054: EX28DRAFT_4054 - metabolite-proton symporter, at 27,090 to 28,412
_4054
EX28DRAFT_4055: EX28DRAFT_4055 - inner membrane protein YhjD, at 28,673 to 29,698
_4055
EX28DRAFT_4056: EX28DRAFT_4056 - Transcriptional regulator, at 29,751 to 30,650
_4056
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 27.772 kb on + strand, within EX28DRAFT_4054 at 27.806 kb on + strand, within EX28DRAFT_4054 at 28.063 kb on + strand, within EX28DRAFT_4054 at 28.064 kb on - strand, within EX28DRAFT_4054 at 28.064 kb on - strand, within EX28DRAFT_4054 at 28.291 kb on + strand at 28.292 kb on - strand at 28.292 kb on - strand at 28.292 kb on - strand at 28.296 kb on - strand at 28.296 kb on - strand at 28.298 kb on - strand at 28.349 kb on + strand at 28.415 kb on + strand at 28.424 kb on - strand at 28.450 kb on - strand at 28.768 kb on - strand at 28.842 kb on + strand, within EX28DRAFT_4055 at 28.962 kb on + strand, within EX28DRAFT_4055 at 28.962 kb on + strand, within EX28DRAFT_4055 at 28.962 kb on + strand, within EX28DRAFT_4055 at 28.963 kb on - strand, within EX28DRAFT_4055 at 28.963 kb on - strand, within EX28DRAFT_4055 at 29.025 kb on + strand, within EX28DRAFT_4055 at 29.025 kb on + strand, within EX28DRAFT_4055 at 29.026 kb on - strand, within EX28DRAFT_4055 at 29.034 kb on + strand, within EX28DRAFT_4055 at 29.035 kb on - strand, within EX28DRAFT_4055 at 29.080 kb on + strand, within EX28DRAFT_4055 at 29.118 kb on - strand, within EX28DRAFT_4055 at 29.142 kb on + strand, within EX28DRAFT_4055 at 29.146 kb on + strand, within EX28DRAFT_4055 at 29.176 kb on + strand, within EX28DRAFT_4055 at 29.247 kb on + strand, within EX28DRAFT_4055 at 29.284 kb on + strand, within EX28DRAFT_4055 at 29.350 kb on + strand, within EX28DRAFT_4055 at 29.350 kb on + strand, within EX28DRAFT_4055 at 29.371 kb on + strand, within EX28DRAFT_4055 at 29.652 kb on + strand at 29.653 kb on - strand at 29.653 kb on - strand at 29.657 kb on + strand at 29.657 kb on + strand at 29.658 kb on - strand at 29.658 kb on - strand at 29.740 kb on - strand at 29.742 kb on - strand at 29.781 kb on + strand at 29.936 kb on + strand, within EX28DRAFT_4056 at 30.035 kb on - strand, within EX28DRAFT_4056 at 30.139 kb on + strand, within EX28DRAFT_4056 at 30.139 kb on + strand, within EX28DRAFT_4056 at 30.458 kb on - strand, within EX28DRAFT_4056 at 30.507 kb on + strand, within EX28DRAFT_4056
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 27,772 + EX28DRAFT_4054 0.52 +0.3 27,806 + EX28DRAFT_4054 0.54 -0.4 28,063 + EX28DRAFT_4054 0.74 +0.3 28,064 - EX28DRAFT_4054 0.74 +0.0 28,064 - EX28DRAFT_4054 0.74 +0.2 28,291 + +0.6 28,292 - +1.4 28,292 - -1.9 28,292 - -3.6 28,296 - -0.2 28,296 - -1.7 28,298 - +0.0 28,349 + -0.2 28,415 + +1.0 28,424 - -4.2 28,450 - +0.0 28,768 - -0.1 28,842 + EX28DRAFT_4055 0.16 -0.1 28,962 + EX28DRAFT_4055 0.28 +0.1 28,962 + EX28DRAFT_4055 0.28 -1.5 28,962 + EX28DRAFT_4055 0.28 +0.8 28,963 - EX28DRAFT_4055 0.28 +0.1 28,963 - EX28DRAFT_4055 0.28 +0.3 29,025 + EX28DRAFT_4055 0.34 -0.6 29,025 + EX28DRAFT_4055 0.34 +1.1 29,026 - EX28DRAFT_4055 0.34 +0.2 29,034 + EX28DRAFT_4055 0.35 +1.0 29,035 - EX28DRAFT_4055 0.35 +0.5 29,080 + EX28DRAFT_4055 0.40 -0.4 29,118 - EX28DRAFT_4055 0.43 +1.9 29,142 + EX28DRAFT_4055 0.46 +0.1 29,146 + EX28DRAFT_4055 0.46 +0.2 29,176 + EX28DRAFT_4055 0.49 +0.3 29,247 + EX28DRAFT_4055 0.56 +0.0 29,284 + EX28DRAFT_4055 0.60 +1.4 29,350 + EX28DRAFT_4055 0.66 +0.1 29,350 + EX28DRAFT_4055 0.66 +0.5 29,371 + EX28DRAFT_4055 0.68 -0.6 29,652 + +0.3 29,653 - +0.5 29,653 - +0.3 29,657 + -0.1 29,657 + -0.5 29,658 - +0.8 29,658 - -0.2 29,740 - -0.0 29,742 - -0.3 29,781 + -1.1 29,936 + EX28DRAFT_4056 0.21 +1.4 30,035 - EX28DRAFT_4056 0.32 -0.7 30,139 + EX28DRAFT_4056 0.43 -0.3 30,139 + EX28DRAFT_4056 0.43 -1.3 30,458 - EX28DRAFT_4056 0.79 +0.5 30,507 + EX28DRAFT_4056 0.84 -0.2
Or see this region's nucleotide sequence