Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3923 and EX28DRAFT_3924 are separated by 99 nucleotides EX28DRAFT_3924 and EX28DRAFT_3925 are separated by 102 nucleotides EX28DRAFT_3925 and EX28DRAFT_3926 are separated by 145 nucleotides
EX28DRAFT_3923: EX28DRAFT_3923 - Predicted transcriptional regulators, at 132,885 to 133,610
_3923
EX28DRAFT_3924: EX28DRAFT_3924 - hydroxyisourate hydrolase, at 133,710 to 134,120
_3924
EX28DRAFT_3925: EX28DRAFT_3925 - Uncharacterized conserved protein, at 134,223 to 135,182
_3925
EX28DRAFT_3926: EX28DRAFT_3926 - Predicted ATPase, at 135,328 to 136,416
_3926
Position (kb) 134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 133.326 kb on + strand, within EX28DRAFT_3923 at 133.327 kb on - strand, within EX28DRAFT_3923 at 133.373 kb on + strand, within EX28DRAFT_3923 at 133.374 kb on - strand, within EX28DRAFT_3923 at 133.374 kb on - strand, within EX28DRAFT_3923 at 133.511 kb on + strand, within EX28DRAFT_3923 at 133.511 kb on + strand, within EX28DRAFT_3923 at 133.512 kb on - strand, within EX28DRAFT_3923 at 133.690 kb on + strand at 133.691 kb on - strand at 133.960 kb on - strand, within EX28DRAFT_3924 at 133.961 kb on + strand, within EX28DRAFT_3924 at 133.961 kb on + strand, within EX28DRAFT_3924 at 133.961 kb on + strand, within EX28DRAFT_3924 at 133.987 kb on - strand, within EX28DRAFT_3924 at 134.118 kb on + strand at 134.121 kb on + strand at 134.202 kb on + strand at 134.203 kb on - strand at 134.203 kb on - strand at 134.301 kb on - strand at 134.396 kb on - strand, within EX28DRAFT_3925 at 134.396 kb on - strand, within EX28DRAFT_3925 at 134.493 kb on + strand, within EX28DRAFT_3925 at 134.748 kb on - strand, within EX28DRAFT_3925 at 134.794 kb on - strand, within EX28DRAFT_3925 at 134.795 kb on + strand, within EX28DRAFT_3925 at 134.970 kb on - strand, within EX28DRAFT_3925 at 134.979 kb on + strand, within EX28DRAFT_3925 at 135.059 kb on + strand, within EX28DRAFT_3925 at 135.091 kb on - strand at 135.114 kb on + strand at 135.132 kb on + strand at 135.132 kb on + strand at 135.295 kb on + strand at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.439 kb on + strand, within EX28DRAFT_3926 at 135.440 kb on - strand, within EX28DRAFT_3926 at 135.589 kb on + strand, within EX28DRAFT_3926 at 135.596 kb on - strand, within EX28DRAFT_3926 at 135.602 kb on + strand, within EX28DRAFT_3926 at 135.602 kb on + strand, within EX28DRAFT_3926 at 135.603 kb on - strand, within EX28DRAFT_3926 at 135.603 kb on - strand, within EX28DRAFT_3926 at 135.726 kb on + strand, within EX28DRAFT_3926 at 135.727 kb on - strand, within EX28DRAFT_3926 at 135.791 kb on - strand, within EX28DRAFT_3926 at 135.806 kb on + strand, within EX28DRAFT_3926 at 135.871 kb on - strand, within EX28DRAFT_3926 at 135.883 kb on + strand, within EX28DRAFT_3926
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 133,326 + EX28DRAFT_3923 0.61 +1.1 133,327 - EX28DRAFT_3923 0.61 +0.3 133,373 + EX28DRAFT_3923 0.67 +0.4 133,374 - EX28DRAFT_3923 0.67 +1.3 133,374 - EX28DRAFT_3923 0.67 +0.9 133,511 + EX28DRAFT_3923 0.86 +0.8 133,511 + EX28DRAFT_3923 0.86 -1.5 133,512 - EX28DRAFT_3923 0.86 -0.2 133,690 + +0.0 133,691 - +1.2 133,960 - EX28DRAFT_3924 0.61 +1.2 133,961 + EX28DRAFT_3924 0.61 +0.6 133,961 + EX28DRAFT_3924 0.61 +0.7 133,961 + EX28DRAFT_3924 0.61 -0.3 133,987 - EX28DRAFT_3924 0.67 +0.1 134,118 + -1.4 134,121 + +0.4 134,202 + -0.6 134,203 - +0.3 134,203 - -0.2 134,301 - -1.7 134,396 - EX28DRAFT_3925 0.18 -0.1 134,396 - EX28DRAFT_3925 0.18 +0.5 134,493 + EX28DRAFT_3925 0.28 +1.3 134,748 - EX28DRAFT_3925 0.55 -2.3 134,794 - EX28DRAFT_3925 0.59 +0.4 134,795 + EX28DRAFT_3925 0.60 +0.6 134,970 - EX28DRAFT_3925 0.78 +0.6 134,979 + EX28DRAFT_3925 0.79 -0.3 135,059 + EX28DRAFT_3925 0.87 -0.5 135,091 - -1.3 135,114 + -0.5 135,132 + -0.0 135,132 + +1.2 135,295 + +0.6 135,439 + EX28DRAFT_3926 0.10 -3.1 135,439 + EX28DRAFT_3926 0.10 -1.4 135,439 + EX28DRAFT_3926 0.10 -0.7 135,440 - EX28DRAFT_3926 0.10 +0.5 135,589 + EX28DRAFT_3926 0.24 -1.7 135,596 - EX28DRAFT_3926 0.25 +0.1 135,602 + EX28DRAFT_3926 0.25 +1.4 135,602 + EX28DRAFT_3926 0.25 +1.3 135,603 - EX28DRAFT_3926 0.25 -1.2 135,603 - EX28DRAFT_3926 0.25 +0.0 135,726 + EX28DRAFT_3926 0.37 +0.6 135,727 - EX28DRAFT_3926 0.37 +0.4 135,791 - EX28DRAFT_3926 0.43 +0.4 135,806 + EX28DRAFT_3926 0.44 -1.3 135,871 - EX28DRAFT_3926 0.50 -0.9 135,883 + EX28DRAFT_3926 0.51 -3.7
Or see this region's nucleotide sequence