Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3913

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3912 and EX28DRAFT_3913 are separated by 85 nucleotidesEX28DRAFT_3913 and EX28DRAFT_3914 are separated by 129 nucleotidesEX28DRAFT_3914 and EX28DRAFT_3915 are separated by 1 nucleotides EX28DRAFT_3912: EX28DRAFT_3912 - hypothetical protein, at 122,043 to 123,041 _3912 EX28DRAFT_3913: EX28DRAFT_3913 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 123,127 to 124,125 _3913 EX28DRAFT_3914: EX28DRAFT_3914 - hypothetical protein, at 124,255 to 124,734 _3914 EX28DRAFT_3915: EX28DRAFT_3915 - DNA-binding winged-HTH domains, at 124,736 to 125,497 _3915 Position (kb) 123 124 125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 122.454 kb on - strand, within EX28DRAFT_3912at 122.503 kb on + strand, within EX28DRAFT_3912at 122.601 kb on - strand, within EX28DRAFT_3912at 122.601 kb on - strand, within EX28DRAFT_3912at 122.608 kb on + strand, within EX28DRAFT_3912at 122.608 kb on + strand, within EX28DRAFT_3912at 122.609 kb on - strand, within EX28DRAFT_3912at 122.609 kb on - strand, within EX28DRAFT_3912at 122.609 kb on - strand, within EX28DRAFT_3912at 122.612 kb on + strand, within EX28DRAFT_3912at 122.613 kb on - strand, within EX28DRAFT_3912at 122.992 kb on - strandat 123.077 kb on + strandat 123.093 kb on + strandat 123.093 kb on + strandat 123.094 kb on - strandat 123.094 kb on - strandat 123.096 kb on + strandat 123.097 kb on - strandat 123.102 kb on - strandat 123.119 kb on + strandat 123.190 kb on - strandat 123.190 kb on - strandat 123.207 kb on + strandat 123.207 kb on + strandat 123.404 kb on + strand, within EX28DRAFT_3913at 123.404 kb on + strand, within EX28DRAFT_3913at 123.404 kb on + strand, within EX28DRAFT_3913at 123.405 kb on - strand, within EX28DRAFT_3913at 123.552 kb on + strand, within EX28DRAFT_3913at 123.733 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.755 kb on - strand, within EX28DRAFT_3913at 123.755 kb on - strand, within EX28DRAFT_3913at 123.776 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.853 kb on - strand, within EX28DRAFT_3913at 123.965 kb on - strand, within EX28DRAFT_3913at 124.013 kb on - strand, within EX28DRAFT_3913at 124.057 kb on + strandat 124.078 kb on - strandat 124.146 kb on - strandat 124.175 kb on + strandat 124.188 kb on + strandat 124.214 kb on - strandat 124.283 kb on + strandat 124.338 kb on + strand, within EX28DRAFT_3914at 124.347 kb on - strand, within EX28DRAFT_3914at 124.350 kb on + strand, within EX28DRAFT_3914at 124.569 kb on - strand, within EX28DRAFT_3914at 124.611 kb on + strand, within EX28DRAFT_3914at 124.644 kb on - strand, within EX28DRAFT_3914at 124.644 kb on - strand, within EX28DRAFT_3914at 124.662 kb on - strand, within EX28DRAFT_3914at 124.664 kb on + strand, within EX28DRAFT_3914at 124.737 kb on + strandat 124.750 kb on + strandat 124.755 kb on + strandat 124.765 kb on + strandat 124.842 kb on + strand, within EX28DRAFT_3915at 124.842 kb on + strand, within EX28DRAFT_3915at 124.843 kb on - strand, within EX28DRAFT_3915at 124.939 kb on - strand, within EX28DRAFT_3915at 124.989 kb on + strand, within EX28DRAFT_3915at 124.990 kb on - strand, within EX28DRAFT_3915at 125.046 kb on - strand, within EX28DRAFT_3915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
remove
122,454 - EX28DRAFT_3912 0.41 +0.0
122,503 + EX28DRAFT_3912 0.46 +0.1
122,601 - EX28DRAFT_3912 0.56 +0.9
122,601 - EX28DRAFT_3912 0.56 -1.1
122,608 + EX28DRAFT_3912 0.57 -1.5
122,608 + EX28DRAFT_3912 0.57 -0.2
122,609 - EX28DRAFT_3912 0.57 -0.2
122,609 - EX28DRAFT_3912 0.57 +0.3
122,609 - EX28DRAFT_3912 0.57 -1.0
122,612 + EX28DRAFT_3912 0.57 -1.0
122,613 - EX28DRAFT_3912 0.57 -0.2
122,992 - +0.8
123,077 + -0.3
123,093 + +0.6
123,093 + -0.1
123,094 - -1.0
123,094 - -1.4
123,096 + -0.3
123,097 - -0.8
123,102 - -0.8
123,119 + -1.0
123,190 - +0.6
123,190 - +0.6
123,207 + -0.9
123,207 + -0.2
123,404 + EX28DRAFT_3913 0.28 +0.8
123,404 + EX28DRAFT_3913 0.28 +0.2
123,404 + EX28DRAFT_3913 0.28 +1.8
123,405 - EX28DRAFT_3913 0.28 +0.8
123,552 + EX28DRAFT_3913 0.43 +0.0
123,733 - EX28DRAFT_3913 0.61 -1.4
123,751 - EX28DRAFT_3913 0.62 +0.7
123,751 - EX28DRAFT_3913 0.62 +0.6
123,751 - EX28DRAFT_3913 0.62 -1.4
123,751 - EX28DRAFT_3913 0.62 +0.5
123,755 - EX28DRAFT_3913 0.63 +1.3
123,755 - EX28DRAFT_3913 0.63 +0.8
123,776 + EX28DRAFT_3913 0.65 +0.3
123,852 + EX28DRAFT_3913 0.73 +0.4
123,852 + EX28DRAFT_3913 0.73 +0.4
123,852 + EX28DRAFT_3913 0.73 +0.0
123,852 + EX28DRAFT_3913 0.73 +0.2
123,853 - EX28DRAFT_3913 0.73 -0.5
123,965 - EX28DRAFT_3913 0.84 +0.3
124,013 - EX28DRAFT_3913 0.89 -1.5
124,057 + -2.5
124,078 - -0.2
124,146 - -4.6
124,175 + -0.2
124,188 + -2.2
124,214 - +0.3
124,283 + +0.2
124,338 + EX28DRAFT_3914 0.17 +0.1
124,347 - EX28DRAFT_3914 0.19 +0.2
124,350 + EX28DRAFT_3914 0.20 -0.6
124,569 - EX28DRAFT_3914 0.65 -1.3
124,611 + EX28DRAFT_3914 0.74 +0.4
124,644 - EX28DRAFT_3914 0.81 -0.2
124,644 - EX28DRAFT_3914 0.81 +1.0
124,662 - EX28DRAFT_3914 0.85 -0.7
124,664 + EX28DRAFT_3914 0.85 +0.2
124,737 + +1.0
124,750 + +1.7
124,755 + +0.3
124,765 + -0.4
124,842 + EX28DRAFT_3915 0.14 +0.3
124,842 + EX28DRAFT_3915 0.14 -1.0
124,843 - EX28DRAFT_3915 0.14 -0.2
124,939 - EX28DRAFT_3915 0.27 -0.6
124,989 + EX28DRAFT_3915 0.33 -0.7
124,990 - EX28DRAFT_3915 0.33 -0.1
125,046 - EX28DRAFT_3915 0.41 +0.4

Or see this region's nucleotide sequence