Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3664

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3661 and EX28DRAFT_3662 are separated by 67 nucleotidesEX28DRAFT_3662 and EX28DRAFT_3663 overlap by 226 nucleotidesEX28DRAFT_3663 and EX28DRAFT_3664 are separated by 119 nucleotidesEX28DRAFT_3664 and EX28DRAFT_3665 are separated by 48 nucleotidesEX28DRAFT_3665 and EX28DRAFT_3666 are separated by 106 nucleotides EX28DRAFT_3661: EX28DRAFT_3661 - ABC-type uncharacterized transport system, periplasmic component, at 328,792 to 330,447 _3661 EX28DRAFT_3662: EX28DRAFT_3662 - RNA, at 330,515 to 330,761 _3662 EX28DRAFT_3663: EX28DRAFT_3663 - hypothetical protein, at 330,536 to 330,688 _3663 EX28DRAFT_3664: EX28DRAFT_3664 - sugar efflux transporter, at 330,808 to 331,986 _3664 EX28DRAFT_3665: EX28DRAFT_3665 - Cytochrome b(N-terminal)/b6/petB, at 332,035 to 332,616 _3665 EX28DRAFT_3666: EX28DRAFT_3666 - cation diffusion facilitator family transporter, at 332,723 to 333,613 _3666 Position (kb) 330 331 332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 329.808 kb on - strand, within EX28DRAFT_3661at 330.236 kb on + strand, within EX28DRAFT_3661at 330.349 kb on - strandat 330.494 kb on - strandat 330.563 kb on + strandat 330.572 kb on + strandat 330.639 kb on + strandat 330.665 kb on - strandat 330.714 kb on + strandat 330.714 kb on + strandat 330.768 kb on + strandat 330.768 kb on + strandat 330.769 kb on - strandat 330.769 kb on - strandat 330.877 kb on - strandat 330.971 kb on - strand, within EX28DRAFT_3664at 331.114 kb on + strand, within EX28DRAFT_3664at 331.310 kb on - strand, within EX28DRAFT_3664at 331.310 kb on - strand, within EX28DRAFT_3664at 331.318 kb on - strand, within EX28DRAFT_3664at 331.470 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.507 kb on + strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.508 kb on - strand, within EX28DRAFT_3664at 331.518 kb on + strand, within EX28DRAFT_3664at 331.624 kb on + strand, within EX28DRAFT_3664at 332.046 kb on - strandat 332.052 kb on - strandat 332.052 kb on - strandat 332.052 kb on - strandat 332.056 kb on - strandat 332.079 kb on - strandat 332.079 kb on - strandat 332.082 kb on + strandat 332.082 kb on + strandat 332.083 kb on - strandat 332.083 kb on - strandat 332.117 kb on + strand, within EX28DRAFT_3665at 332.117 kb on + strand, within EX28DRAFT_3665at 332.118 kb on - strand, within EX28DRAFT_3665at 332.145 kb on + strand, within EX28DRAFT_3665at 332.146 kb on - strand, within EX28DRAFT_3665at 332.326 kb on - strand, within EX28DRAFT_3665at 332.350 kb on + strand, within EX28DRAFT_3665at 332.370 kb on - strand, within EX28DRAFT_3665at 332.370 kb on - strand, within EX28DRAFT_3665at 332.372 kb on + strand, within EX28DRAFT_3665at 332.373 kb on - strand, within EX28DRAFT_3665at 332.377 kb on - strand, within EX28DRAFT_3665at 332.446 kb on - strand, within EX28DRAFT_3665at 332.540 kb on - strand, within EX28DRAFT_3665at 332.707 kb on + strandat 332.708 kb on - strandat 332.708 kb on - strandat 332.783 kb on - strandat 332.825 kb on + strand, within EX28DRAFT_3666at 332.826 kb on - strand, within EX28DRAFT_3666

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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329,808 - EX28DRAFT_3661 0.61 -1.1
330,236 + EX28DRAFT_3661 0.87 +0.9
330,349 - -0.3
330,494 - +0.8
330,563 + +0.8
330,572 + -3.8
330,639 + -0.7
330,665 - -1.7
330,714 + -0.4
330,714 + +0.3
330,768 + -0.6
330,768 + -3.8
330,769 - -0.9
330,769 - +0.5
330,877 - +0.5
330,971 - EX28DRAFT_3664 0.14 -0.6
331,114 + EX28DRAFT_3664 0.26 +2.2
331,310 - EX28DRAFT_3664 0.43 -1.0
331,310 - EX28DRAFT_3664 0.43 -1.3
331,318 - EX28DRAFT_3664 0.43 -0.7
331,470 + EX28DRAFT_3664 0.56 +0.6
331,507 + EX28DRAFT_3664 0.59 -0.2
331,507 + EX28DRAFT_3664 0.59 +0.7
331,507 + EX28DRAFT_3664 0.59 -1.0
331,507 + EX28DRAFT_3664 0.59 +0.5
331,507 + EX28DRAFT_3664 0.59 +1.5
331,507 + EX28DRAFT_3664 0.59 -0.4
331,507 + EX28DRAFT_3664 0.59 -0.3
331,507 + EX28DRAFT_3664 0.59 +1.6
331,508 - EX28DRAFT_3664 0.59 -0.3
331,508 - EX28DRAFT_3664 0.59 -0.1
331,508 - EX28DRAFT_3664 0.59 -1.4
331,508 - EX28DRAFT_3664 0.59 -0.1
331,508 - EX28DRAFT_3664 0.59 +0.4
331,508 - EX28DRAFT_3664 0.59 -1.6
331,508 - EX28DRAFT_3664 0.59 +0.3
331,508 - EX28DRAFT_3664 0.59 -1.5
331,518 + EX28DRAFT_3664 0.60 -0.2
331,624 + EX28DRAFT_3664 0.69 -1.1
332,046 - +0.1
332,052 - +1.1
332,052 - +0.1
332,052 - -0.5
332,056 - -0.2
332,079 - +1.7
332,079 - +0.1
332,082 + -0.3
332,082 + -0.1
332,083 - +0.1
332,083 - -1.2
332,117 + EX28DRAFT_3665 0.14 +0.1
332,117 + EX28DRAFT_3665 0.14 -0.5
332,118 - EX28DRAFT_3665 0.14 -0.8
332,145 + EX28DRAFT_3665 0.19 +0.6
332,146 - EX28DRAFT_3665 0.19 +0.1
332,326 - EX28DRAFT_3665 0.50 -0.5
332,350 + EX28DRAFT_3665 0.54 -1.5
332,370 - EX28DRAFT_3665 0.58 -2.2
332,370 - EX28DRAFT_3665 0.58 +0.4
332,372 + EX28DRAFT_3665 0.58 -1.1
332,373 - EX28DRAFT_3665 0.58 +2.1
332,377 - EX28DRAFT_3665 0.59 +0.3
332,446 - EX28DRAFT_3665 0.71 -0.3
332,540 - EX28DRAFT_3665 0.87 -0.4
332,707 + +1.7
332,708 - +1.8
332,708 - +0.3
332,783 - -3.1
332,825 + EX28DRAFT_3666 0.11 -1.2
332,826 - EX28DRAFT_3666 0.12 +0.8

Or see this region's nucleotide sequence