Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3627 and EX28DRAFT_3628 are separated by 173 nucleotides EX28DRAFT_3628 and EX28DRAFT_3629 are separated by 58 nucleotides
EX28DRAFT_3627: EX28DRAFT_3627 - chaperone protein DnaJ, at 286,113 to 287,258
_3627
EX28DRAFT_3628: EX28DRAFT_3628 - Na+/H+ antiporter NhaA, at 287,432 to 288,607
_3628
EX28DRAFT_3629: EX28DRAFT_3629 - Transcriptional regulator, at 288,666 to 289,565
_3629
Position (kb) 287
288
289 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 287.314 kb on - strand at 287.323 kb on + strand at 287.325 kb on + strand at 287.325 kb on + strand at 287.325 kb on + strand at 287.326 kb on - strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.376 kb on + strand at 287.388 kb on + strand at 287.388 kb on + strand at 287.388 kb on + strand at 287.388 kb on + strand at 287.389 kb on - strand at 287.392 kb on - strand at 287.392 kb on - strand at 287.408 kb on - strand at 287.408 kb on - strand at 287.429 kb on + strand at 287.440 kb on - strand at 287.442 kb on + strand at 287.543 kb on + strand at 287.543 kb on + strand at 287.543 kb on + strand at 287.544 kb on - strand at 287.575 kb on - strand, within EX28DRAFT_3628 at 287.575 kb on - strand, within EX28DRAFT_3628 at 287.575 kb on - strand, within EX28DRAFT_3628 at 287.954 kb on + strand, within EX28DRAFT_3628 at 287.955 kb on - strand, within EX28DRAFT_3628 at 287.955 kb on - strand, within EX28DRAFT_3628 at 288.050 kb on - strand, within EX28DRAFT_3628 at 288.053 kb on + strand, within EX28DRAFT_3628 at 288.053 kb on + strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.054 kb on - strand, within EX28DRAFT_3628 at 288.448 kb on + strand, within EX28DRAFT_3628 at 288.541 kb on - strand at 288.562 kb on + strand at 288.563 kb on - strand at 288.681 kb on + strand at 288.681 kb on + strand at 288.694 kb on - strand at 288.696 kb on + strand at 288.696 kb on + strand at 288.697 kb on - strand at 288.712 kb on - strand at 288.712 kb on - strand at 288.750 kb on + strand at 289.103 kb on + strand, within EX28DRAFT_3629 at 289.103 kb on + strand, within EX28DRAFT_3629 at 289.191 kb on - strand, within EX28DRAFT_3629 at 289.246 kb on + strand, within EX28DRAFT_3629 at 289.293 kb on - strand, within EX28DRAFT_3629 at 289.293 kb on - strand, within EX28DRAFT_3629 at 289.468 kb on - strand, within EX28DRAFT_3629 at 289.477 kb on + strand at 289.477 kb on + strand at 289.477 kb on + strand at 289.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 287,314 - +0.8 287,323 + -0.1 287,325 + +1.0 287,325 + -1.5 287,325 + +0.2 287,326 - -1.5 287,345 + -4.8 287,345 + -1.3 287,345 + +0.1 287,345 + -0.4 287,376 + +0.4 287,388 + -1.2 287,388 + -0.9 287,388 + +0.4 287,388 + +0.6 287,389 - -3.0 287,392 - +0.1 287,392 - -0.2 287,408 - +0.7 287,408 - +0.0 287,429 + -1.9 287,440 - +0.0 287,442 + +3.1 287,543 + +0.3 287,543 + -0.4 287,543 + +0.6 287,544 - +0.4 287,575 - EX28DRAFT_3628 0.12 -1.4 287,575 - EX28DRAFT_3628 0.12 -3.7 287,575 - EX28DRAFT_3628 0.12 +1.0 287,954 + EX28DRAFT_3628 0.44 +0.9 287,955 - EX28DRAFT_3628 0.44 +0.8 287,955 - EX28DRAFT_3628 0.44 -0.3 288,050 - EX28DRAFT_3628 0.53 +3.1 288,053 + EX28DRAFT_3628 0.53 +1.3 288,053 + EX28DRAFT_3628 0.53 -0.3 288,054 - EX28DRAFT_3628 0.53 -0.4 288,054 - EX28DRAFT_3628 0.53 -1.0 288,054 - EX28DRAFT_3628 0.53 -0.5 288,054 - EX28DRAFT_3628 0.53 -0.2 288,054 - EX28DRAFT_3628 0.53 +0.5 288,054 - EX28DRAFT_3628 0.53 -0.8 288,448 + EX28DRAFT_3628 0.86 +1.0 288,541 - +0.1 288,562 + -0.9 288,563 - -0.1 288,681 + -0.2 288,681 + -0.9 288,694 - +0.2 288,696 + -0.8 288,696 + +1.2 288,697 - +0.4 288,712 - -2.2 288,712 - -1.2 288,750 + -0.9 289,103 + EX28DRAFT_3629 0.49 -0.5 289,103 + EX28DRAFT_3629 0.49 -0.6 289,191 - EX28DRAFT_3629 0.58 +0.0 289,246 + EX28DRAFT_3629 0.64 -0.8 289,293 - EX28DRAFT_3629 0.70 +0.2 289,293 - EX28DRAFT_3629 0.70 -2.0 289,468 - EX28DRAFT_3629 0.89 -0.6 289,477 + -1.3 289,477 + -0.0 289,477 + -0.5 289,547 + -0.2
Or see this region's nucleotide sequence