Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3481 and EX28DRAFT_3482 overlap by 4 nucleotides EX28DRAFT_3482 and EX28DRAFT_3483 are separated by 21 nucleotides EX28DRAFT_3483 and EX28DRAFT_3484 are separated by 121 nucleotides EX28DRAFT_3484 and EX28DRAFT_3485 overlap by 1 nucleotides
EX28DRAFT_3481: EX28DRAFT_3481 - hypothetical protein, at 146,308 to 146,532
_3481
EX28DRAFT_3482: EX28DRAFT_3482 - hypothetical protein, at 146,529 to 146,897
_3482
EX28DRAFT_3483: EX28DRAFT_3483 - Phage major capsid protein E, at 146,919 to 147,950
_3483
EX28DRAFT_3484: EX28DRAFT_3484 - hypothetical protein, at 148,072 to 148,263
_3484
EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107
_3485
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 145.952 kb on - strand at 145.998 kb on + strand at 146.010 kb on - strand at 146.130 kb on - strand at 146.399 kb on - strand, within EX28DRAFT_3481 at 146.554 kb on - strand at 146.642 kb on + strand, within EX28DRAFT_3482 at 146.666 kb on + strand, within EX28DRAFT_3482 at 146.669 kb on + strand, within EX28DRAFT_3482 at 146.669 kb on + strand, within EX28DRAFT_3482 at 146.670 kb on - strand, within EX28DRAFT_3482 at 146.670 kb on - strand, within EX28DRAFT_3482 at 146.670 kb on - strand, within EX28DRAFT_3482 at 146.728 kb on - strand, within EX28DRAFT_3482 at 146.747 kb on + strand, within EX28DRAFT_3482 at 146.747 kb on + strand, within EX28DRAFT_3482 at 146.748 kb on - strand, within EX28DRAFT_3482 at 146.765 kb on - strand, within EX28DRAFT_3482 at 146.845 kb on + strand, within EX28DRAFT_3482 at 146.915 kb on + strand at 146.929 kb on + strand at 146.930 kb on - strand at 146.959 kb on + strand at 146.981 kb on + strand at 146.982 kb on - strand at 147.078 kb on + strand, within EX28DRAFT_3483 at 147.078 kb on + strand, within EX28DRAFT_3483 at 147.079 kb on - strand, within EX28DRAFT_3483 at 147.079 kb on - strand, within EX28DRAFT_3483 at 147.144 kb on + strand, within EX28DRAFT_3483 at 147.145 kb on - strand, within EX28DRAFT_3483 at 147.162 kb on + strand, within EX28DRAFT_3483 at 147.169 kb on + strand, within EX28DRAFT_3483 at 147.212 kb on + strand, within EX28DRAFT_3483 at 147.229 kb on + strand, within EX28DRAFT_3483 at 147.242 kb on + strand, within EX28DRAFT_3483 at 147.250 kb on + strand, within EX28DRAFT_3483 at 147.250 kb on + strand, within EX28DRAFT_3483 at 147.250 kb on + strand, within EX28DRAFT_3483 at 147.250 kb on + strand, within EX28DRAFT_3483 at 147.251 kb on - strand, within EX28DRAFT_3483 at 147.251 kb on - strand, within EX28DRAFT_3483 at 147.251 kb on - strand, within EX28DRAFT_3483 at 147.251 kb on - strand, within EX28DRAFT_3483 at 147.251 kb on - strand, within EX28DRAFT_3483 at 147.252 kb on + strand, within EX28DRAFT_3483 at 147.252 kb on + strand, within EX28DRAFT_3483 at 147.253 kb on - strand, within EX28DRAFT_3483 at 147.253 kb on - strand, within EX28DRAFT_3483 at 147.253 kb on - strand, within EX28DRAFT_3483 at 147.294 kb on - strand, within EX28DRAFT_3483 at 147.322 kb on + strand, within EX28DRAFT_3483 at 147.391 kb on + strand, within EX28DRAFT_3483 at 147.392 kb on - strand, within EX28DRAFT_3483 at 147.414 kb on - strand, within EX28DRAFT_3483 at 147.414 kb on - strand, within EX28DRAFT_3483 at 147.426 kb on - strand, within EX28DRAFT_3483 at 147.442 kb on + strand, within EX28DRAFT_3483 at 147.442 kb on + strand, within EX28DRAFT_3483 at 147.443 kb on - strand, within EX28DRAFT_3483 at 147.443 kb on - strand, within EX28DRAFT_3483 at 147.616 kb on + strand, within EX28DRAFT_3483 at 147.616 kb on + strand, within EX28DRAFT_3483 at 147.617 kb on - strand, within EX28DRAFT_3483 at 147.618 kb on + strand, within EX28DRAFT_3483 at 147.644 kb on + strand, within EX28DRAFT_3483 at 147.644 kb on + strand, within EX28DRAFT_3483 at 147.706 kb on + strand, within EX28DRAFT_3483 at 147.740 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.783 kb on + strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.784 kb on - strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.837 kb on + strand, within EX28DRAFT_3483 at 147.838 kb on - strand, within EX28DRAFT_3483 at 147.839 kb on + strand, within EX28DRAFT_3483 at 147.932 kb on - strand at 147.935 kb on + strand at 147.935 kb on + strand at 147.936 kb on - strand at 147.936 kb on - strand at 148.071 kb on - strand at 148.137 kb on - strand, within EX28DRAFT_3484 at 148.197 kb on - strand, within EX28DRAFT_3484 at 148.217 kb on + strand, within EX28DRAFT_3484 at 148.218 kb on - strand, within EX28DRAFT_3484 at 148.245 kb on + strand at 148.245 kb on + strand at 148.418 kb on + strand at 148.419 kb on - strand at 148.424 kb on + strand at 148.647 kb on - strand, within EX28DRAFT_3485 at 148.657 kb on - strand, within EX28DRAFT_3485 at 148.657 kb on - strand, within EX28DRAFT_3485 at 148.707 kb on - strand, within EX28DRAFT_3485 at 148.736 kb on + strand, within EX28DRAFT_3485 at 148.756 kb on + strand, within EX28DRAFT_3485 at 148.805 kb on + strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.806 kb on - strand, within EX28DRAFT_3485 at 148.813 kb on - strand, within EX28DRAFT_3485 at 148.844 kb on + strand, within EX28DRAFT_3485 at 148.876 kb on + strand, within EX28DRAFT_3485 at 148.876 kb on + strand, within EX28DRAFT_3485 at 148.877 kb on - strand, within EX28DRAFT_3485 at 148.891 kb on + strand, within EX28DRAFT_3485 at 148.891 kb on + strand, within EX28DRAFT_3485 at 148.894 kb on + strand, within EX28DRAFT_3485 at 148.928 kb on + strand, within EX28DRAFT_3485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 145,952 - -0.0 145,998 + -2.1 146,010 - -3.5 146,130 - +1.8 146,399 - EX28DRAFT_3481 0.40 +0.2 146,554 - -0.3 146,642 + EX28DRAFT_3482 0.31 +0.4 146,666 + EX28DRAFT_3482 0.37 -0.0 146,669 + EX28DRAFT_3482 0.38 +0.0 146,669 + EX28DRAFT_3482 0.38 -0.5 146,670 - EX28DRAFT_3482 0.38 -0.2 146,670 - EX28DRAFT_3482 0.38 +0.9 146,670 - EX28DRAFT_3482 0.38 +0.8 146,728 - EX28DRAFT_3482 0.54 +0.6 146,747 + EX28DRAFT_3482 0.59 +0.6 146,747 + EX28DRAFT_3482 0.59 -0.8 146,748 - EX28DRAFT_3482 0.59 -1.0 146,765 - EX28DRAFT_3482 0.64 -2.2 146,845 + EX28DRAFT_3482 0.86 +0.1 146,915 + +5.7 146,929 + -1.4 146,930 - -0.6 146,959 + +0.0 146,981 + +1.9 146,982 - -1.9 147,078 + EX28DRAFT_3483 0.15 +0.7 147,078 + EX28DRAFT_3483 0.15 -1.5 147,079 - EX28DRAFT_3483 0.16 +0.8 147,079 - EX28DRAFT_3483 0.16 -0.7 147,144 + EX28DRAFT_3483 0.22 +0.2 147,145 - EX28DRAFT_3483 0.22 -0.1 147,162 + EX28DRAFT_3483 0.24 -0.2 147,169 + EX28DRAFT_3483 0.24 -0.8 147,212 + EX28DRAFT_3483 0.28 -0.4 147,229 + EX28DRAFT_3483 0.30 -0.8 147,242 + EX28DRAFT_3483 0.31 -0.7 147,250 + EX28DRAFT_3483 0.32 +0.9 147,250 + EX28DRAFT_3483 0.32 -2.6 147,250 + EX28DRAFT_3483 0.32 +0.3 147,250 + EX28DRAFT_3483 0.32 +0.4 147,251 - EX28DRAFT_3483 0.32 +0.8 147,251 - EX28DRAFT_3483 0.32 +0.1 147,251 - EX28DRAFT_3483 0.32 -0.0 147,251 - EX28DRAFT_3483 0.32 -3.6 147,251 - EX28DRAFT_3483 0.32 -1.1 147,252 + EX28DRAFT_3483 0.32 -0.7 147,252 + EX28DRAFT_3483 0.32 +0.3 147,253 - EX28DRAFT_3483 0.32 +0.1 147,253 - EX28DRAFT_3483 0.32 -0.2 147,253 - EX28DRAFT_3483 0.32 -0.2 147,294 - EX28DRAFT_3483 0.36 -2.4 147,322 + EX28DRAFT_3483 0.39 +0.2 147,391 + EX28DRAFT_3483 0.46 -1.9 147,392 - EX28DRAFT_3483 0.46 -0.1 147,414 - EX28DRAFT_3483 0.48 +1.5 147,414 - EX28DRAFT_3483 0.48 +0.2 147,426 - EX28DRAFT_3483 0.49 -0.3 147,442 + EX28DRAFT_3483 0.51 +2.2 147,442 + EX28DRAFT_3483 0.51 +2.2 147,443 - EX28DRAFT_3483 0.51 -1.2 147,443 - EX28DRAFT_3483 0.51 +0.9 147,616 + EX28DRAFT_3483 0.68 +0.7 147,616 + EX28DRAFT_3483 0.68 +0.9 147,617 - EX28DRAFT_3483 0.68 -1.4 147,618 + EX28DRAFT_3483 0.68 +0.2 147,644 + EX28DRAFT_3483 0.70 -1.0 147,644 + EX28DRAFT_3483 0.70 +0.2 147,706 + EX28DRAFT_3483 0.76 +0.2 147,740 + EX28DRAFT_3483 0.80 -0.1 147,783 + EX28DRAFT_3483 0.84 +0.2 147,783 + EX28DRAFT_3483 0.84 +0.3 147,783 + EX28DRAFT_3483 0.84 +0.4 147,784 - EX28DRAFT_3483 0.84 +0.0 147,784 - EX28DRAFT_3483 0.84 -1.2 147,784 - EX28DRAFT_3483 0.84 -0.2 147,837 + EX28DRAFT_3483 0.89 +1.8 147,837 + EX28DRAFT_3483 0.89 -1.8 147,837 + EX28DRAFT_3483 0.89 +0.4 147,838 - EX28DRAFT_3483 0.89 -0.5 147,839 + EX28DRAFT_3483 0.89 +0.4 147,932 - +0.2 147,935 + -2.5 147,935 + +0.2 147,936 - -2.9 147,936 - -0.3 148,071 - +0.2 148,137 - EX28DRAFT_3484 0.34 +0.1 148,197 - EX28DRAFT_3484 0.65 +0.6 148,217 + EX28DRAFT_3484 0.76 -1.4 148,218 - EX28DRAFT_3484 0.76 -1.7 148,245 + +0.8 148,245 + +0.3 148,418 + +1.2 148,419 - -0.1 148,424 + -1.2 148,647 - EX28DRAFT_3485 0.21 -2.6 148,657 - EX28DRAFT_3485 0.21 -2.1 148,657 - EX28DRAFT_3485 0.21 -0.5 148,707 - EX28DRAFT_3485 0.24 +1.6 148,736 + EX28DRAFT_3485 0.26 -2.2 148,756 + EX28DRAFT_3485 0.27 -2.3 148,805 + EX28DRAFT_3485 0.29 -0.3 148,806 - EX28DRAFT_3485 0.29 +0.0 148,806 - EX28DRAFT_3485 0.29 +0.3 148,806 - EX28DRAFT_3485 0.29 +0.0 148,813 - EX28DRAFT_3485 0.30 -1.7 148,844 + EX28DRAFT_3485 0.31 -0.2 148,876 + EX28DRAFT_3485 0.33 -0.5 148,876 + EX28DRAFT_3485 0.33 -1.7 148,877 - EX28DRAFT_3485 0.33 -1.2 148,891 + EX28DRAFT_3485 0.34 +0.3 148,891 + EX28DRAFT_3485 0.34 +0.0 148,894 + EX28DRAFT_3485 0.34 -0.9 148,928 + EX28DRAFT_3485 0.36 -0.3
Or see this region's nucleotide sequence