Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3356 and EX28DRAFT_3357 are separated by 44 nucleotides EX28DRAFT_3357 and EX28DRAFT_3358 are separated by 19 nucleotides
EX28DRAFT_3356: EX28DRAFT_3356 - EF-P lysine aminoacylase GenX, at 22,442 to 23,419
_3356
EX28DRAFT_3357: EX28DRAFT_3357 - Small-conductance mechanosensitive channel, at 23,464 to 26,787
_3357
EX28DRAFT_3358: EX28DRAFT_3358 - phosphatidylserine decarboxylase precursor, at 26,807 to 27,775
_3358
Position (kb) 23
24
25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 23.428 kb on - strand at 23.569 kb on - strand at 23.569 kb on - strand at 23.631 kb on + strand at 23.654 kb on + strand at 23.658 kb on + strand at 23.690 kb on - strand at 23.704 kb on + strand at 23.704 kb on + strand at 23.705 kb on - strand at 23.705 kb on - strand at 23.705 kb on - strand at 23.757 kb on - strand at 23.983 kb on - strand, within EX28DRAFT_3357 at 24.043 kb on + strand, within EX28DRAFT_3357 at 24.044 kb on - strand, within EX28DRAFT_3357 at 24.061 kb on + strand, within EX28DRAFT_3357 at 24.061 kb on + strand, within EX28DRAFT_3357 at 24.062 kb on - strand, within EX28DRAFT_3357 at 24.152 kb on + strand, within EX28DRAFT_3357 at 24.152 kb on + strand, within EX28DRAFT_3357 at 24.152 kb on + strand, within EX28DRAFT_3357 at 24.152 kb on + strand, within EX28DRAFT_3357 at 24.194 kb on - strand, within EX28DRAFT_3357 at 24.301 kb on - strand, within EX28DRAFT_3357 at 24.645 kb on - strand, within EX28DRAFT_3357 at 24.719 kb on + strand, within EX28DRAFT_3357 at 24.719 kb on + strand, within EX28DRAFT_3357 at 24.822 kb on - strand, within EX28DRAFT_3357 at 24.878 kb on - strand, within EX28DRAFT_3357 at 24.989 kb on + strand, within EX28DRAFT_3357 at 24.989 kb on + strand, within EX28DRAFT_3357 at 24.990 kb on - strand, within EX28DRAFT_3357 at 24.993 kb on - strand, within EX28DRAFT_3357 at 25.567 kb on + strand, within EX28DRAFT_3357 at 25.657 kb on - strand, within EX28DRAFT_3357 at 25.722 kb on + strand, within EX28DRAFT_3357 at 26.127 kb on - strand, within EX28DRAFT_3357 at 26.292 kb on + strand, within EX28DRAFT_3357 at 26.331 kb on + strand, within EX28DRAFT_3357 at 26.332 kb on - strand, within EX28DRAFT_3357 at 26.582 kb on + strand at 26.583 kb on - strand at 26.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 23,428 - -0.3 23,569 - +0.7 23,569 - -3.0 23,631 + +0.6 23,654 + -0.3 23,658 + -2.3 23,690 - +1.0 23,704 + -2.9 23,704 + +0.5 23,705 - +1.0 23,705 - +0.6 23,705 - +0.2 23,757 - +3.8 23,983 - EX28DRAFT_3357 0.16 +0.8 24,043 + EX28DRAFT_3357 0.17 -4.2 24,044 - EX28DRAFT_3357 0.17 +0.6 24,061 + EX28DRAFT_3357 0.18 +0.7 24,061 + EX28DRAFT_3357 0.18 -0.1 24,062 - EX28DRAFT_3357 0.18 -0.2 24,152 + EX28DRAFT_3357 0.21 +0.6 24,152 + EX28DRAFT_3357 0.21 +1.2 24,152 + EX28DRAFT_3357 0.21 +0.2 24,152 + EX28DRAFT_3357 0.21 -0.5 24,194 - EX28DRAFT_3357 0.22 +1.2 24,301 - EX28DRAFT_3357 0.25 -0.5 24,645 - EX28DRAFT_3357 0.36 -0.0 24,719 + EX28DRAFT_3357 0.38 +1.1 24,719 + EX28DRAFT_3357 0.38 +0.6 24,822 - EX28DRAFT_3357 0.41 +0.3 24,878 - EX28DRAFT_3357 0.43 -0.2 24,989 + EX28DRAFT_3357 0.46 +1.1 24,989 + EX28DRAFT_3357 0.46 -0.2 24,990 - EX28DRAFT_3357 0.46 +1.0 24,993 - EX28DRAFT_3357 0.46 +0.1 25,567 + EX28DRAFT_3357 0.63 +0.2 25,657 - EX28DRAFT_3357 0.66 +1.2 25,722 + EX28DRAFT_3357 0.68 -0.4 26,127 - EX28DRAFT_3357 0.80 -0.2 26,292 + EX28DRAFT_3357 0.85 +2.0 26,331 + EX28DRAFT_3357 0.86 -0.4 26,332 - EX28DRAFT_3357 0.86 +1.2 26,582 + +0.7 26,583 - -2.7 26,768 - +0.3
Or see this region's nucleotide sequence