Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3304 and EX28DRAFT_3305 are separated by 0 nucleotides EX28DRAFT_3305 and EX28DRAFT_3306 are separated by 234 nucleotides EX28DRAFT_3306 and EX28DRAFT_3307 are separated by 21 nucleotides
EX28DRAFT_3304: EX28DRAFT_3304 - Sulfite oxidase and related enzymes, at 605,334 to 606,335
_3304
EX28DRAFT_3305: EX28DRAFT_3305 - Predicted membrane protein, at 606,336 to 606,935
_3305
EX28DRAFT_3306: EX28DRAFT_3306 - 3-dehydroquinate dehydratase (EC 4.2.1.10), at 607,170 to 607,622
_3306
EX28DRAFT_3307: EX28DRAFT_3307 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 607,644 to 608,105
_3307
Position (kb) 606
607 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 605.366 kb on - strand at 605.389 kb on + strand at 605.577 kb on - strand, within EX28DRAFT_3304 at 605.601 kb on + strand, within EX28DRAFT_3304 at 605.751 kb on - strand, within EX28DRAFT_3304 at 605.751 kb on - strand, within EX28DRAFT_3304 at 605.754 kb on + strand, within EX28DRAFT_3304 at 605.755 kb on - strand, within EX28DRAFT_3304 at 605.856 kb on + strand, within EX28DRAFT_3304 at 605.856 kb on + strand, within EX28DRAFT_3304 at 605.941 kb on - strand, within EX28DRAFT_3304 at 605.944 kb on + strand, within EX28DRAFT_3304 at 605.944 kb on + strand, within EX28DRAFT_3304 at 605.944 kb on + strand, within EX28DRAFT_3304 at 605.944 kb on + strand, within EX28DRAFT_3304 at 605.944 kb on + strand, within EX28DRAFT_3304 at 605.969 kb on + strand, within EX28DRAFT_3304 at 605.969 kb on + strand, within EX28DRAFT_3304 at 605.969 kb on + strand, within EX28DRAFT_3304 at 605.969 kb on + strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 605.970 kb on - strand, within EX28DRAFT_3304 at 606.080 kb on + strand, within EX28DRAFT_3304 at 606.080 kb on + strand, within EX28DRAFT_3304 at 606.081 kb on - strand, within EX28DRAFT_3304 at 606.086 kb on + strand, within EX28DRAFT_3304 at 606.098 kb on + strand, within EX28DRAFT_3304 at 606.099 kb on - strand, within EX28DRAFT_3304 at 606.359 kb on + strand at 606.404 kb on + strand, within EX28DRAFT_3305 at 606.404 kb on + strand, within EX28DRAFT_3305 at 606.405 kb on - strand, within EX28DRAFT_3305 at 606.405 kb on - strand, within EX28DRAFT_3305 at 606.405 kb on - strand, within EX28DRAFT_3305 at 606.405 kb on - strand, within EX28DRAFT_3305 at 606.406 kb on + strand, within EX28DRAFT_3305 at 606.406 kb on + strand, within EX28DRAFT_3305 at 606.462 kb on - strand, within EX28DRAFT_3305 at 606.462 kb on - strand, within EX28DRAFT_3305 at 606.535 kb on - strand, within EX28DRAFT_3305 at 606.580 kb on + strand, within EX28DRAFT_3305 at 606.580 kb on + strand, within EX28DRAFT_3305 at 606.618 kb on + strand, within EX28DRAFT_3305 at 606.641 kb on + strand, within EX28DRAFT_3305 at 606.684 kb on + strand, within EX28DRAFT_3305 at 606.788 kb on + strand, within EX28DRAFT_3305 at 606.799 kb on - strand, within EX28DRAFT_3305 at 606.908 kb on + strand at 606.909 kb on - strand at 606.909 kb on - strand at 606.933 kb on + strand at 606.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 605,366 - -0.2 605,389 + -0.8 605,577 - EX28DRAFT_3304 0.24 -0.0 605,601 + EX28DRAFT_3304 0.27 -0.4 605,751 - EX28DRAFT_3304 0.42 +0.4 605,751 - EX28DRAFT_3304 0.42 -0.1 605,754 + EX28DRAFT_3304 0.42 +0.7 605,755 - EX28DRAFT_3304 0.42 +0.2 605,856 + EX28DRAFT_3304 0.52 -2.1 605,856 + EX28DRAFT_3304 0.52 -0.3 605,941 - EX28DRAFT_3304 0.61 +0.4 605,944 + EX28DRAFT_3304 0.61 -0.0 605,944 + EX28DRAFT_3304 0.61 -0.2 605,944 + EX28DRAFT_3304 0.61 +1.7 605,944 + EX28DRAFT_3304 0.61 -0.0 605,944 + EX28DRAFT_3304 0.61 +0.0 605,969 + EX28DRAFT_3304 0.63 +3.7 605,969 + EX28DRAFT_3304 0.63 -0.0 605,969 + EX28DRAFT_3304 0.63 -0.8 605,969 + EX28DRAFT_3304 0.63 +1.7 605,970 - EX28DRAFT_3304 0.63 +0.0 605,970 - EX28DRAFT_3304 0.63 -0.1 605,970 - EX28DRAFT_3304 0.63 +0.5 605,970 - EX28DRAFT_3304 0.63 -0.1 605,970 - EX28DRAFT_3304 0.63 +0.4 605,970 - EX28DRAFT_3304 0.63 -2.8 606,080 + EX28DRAFT_3304 0.74 +1.4 606,080 + EX28DRAFT_3304 0.74 +0.1 606,081 - EX28DRAFT_3304 0.75 -0.5 606,086 + EX28DRAFT_3304 0.75 -1.0 606,098 + EX28DRAFT_3304 0.76 -1.9 606,099 - EX28DRAFT_3304 0.76 +0.0 606,359 + -0.7 606,404 + EX28DRAFT_3305 0.11 -2.1 606,404 + EX28DRAFT_3305 0.11 -0.4 606,405 - EX28DRAFT_3305 0.12 +0.9 606,405 - EX28DRAFT_3305 0.12 +0.4 606,405 - EX28DRAFT_3305 0.12 -0.4 606,405 - EX28DRAFT_3305 0.12 -0.4 606,406 + EX28DRAFT_3305 0.12 -3.5 606,406 + EX28DRAFT_3305 0.12 -4.2 606,462 - EX28DRAFT_3305 0.21 -1.3 606,462 - EX28DRAFT_3305 0.21 +0.2 606,535 - EX28DRAFT_3305 0.33 -0.1 606,580 + EX28DRAFT_3305 0.41 +0.1 606,580 + EX28DRAFT_3305 0.41 -0.2 606,618 + EX28DRAFT_3305 0.47 +0.2 606,641 + EX28DRAFT_3305 0.51 -1.2 606,684 + EX28DRAFT_3305 0.58 -1.8 606,788 + EX28DRAFT_3305 0.75 +0.0 606,799 - EX28DRAFT_3305 0.77 -0.5 606,908 + +0.2 606,909 - +0.1 606,909 - +0.7 606,933 + -0.5 606,934 - +0.3
Or see this region's nucleotide sequence