Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotides EX28DRAFT_3190 and EX28DRAFT_3191 overlap by 4 nucleotides EX28DRAFT_3191 and EX28DRAFT_3192 are separated by 246 nucleotides
EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561
_3189
EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012
_3190
EX28DRAFT_3191: EX28DRAFT_3191 - N-acetylglucosamine-6-phosphate deacetylase, at 491,009 to 492,142
_3191
EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537
_3192
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.235 kb on + strand, within EX28DRAFT_3189 at 490.349 kb on + strand, within EX28DRAFT_3189 at 490.582 kb on + strand at 490.582 kb on + strand at 490.589 kb on + strand at 490.845 kb on - strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 491.074 kb on - strand at 491.074 kb on - strand at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.160 kb on - strand, within EX28DRAFT_3191 at 491.243 kb on - strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.562 kb on + strand, within EX28DRAFT_3191 at 491.648 kb on + strand, within EX28DRAFT_3191 at 491.772 kb on + strand, within EX28DRAFT_3191 at 491.773 kb on - strand, within EX28DRAFT_3191 at 491.833 kb on + strand, within EX28DRAFT_3191 at 491.850 kb on - strand, within EX28DRAFT_3191 at 491.851 kb on + strand, within EX28DRAFT_3191 at 491.852 kb on - strand, within EX28DRAFT_3191 at 491.953 kb on + strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 492.096 kb on + strand at 492.097 kb on - strand at 492.388 kb on + strand at 492.675 kb on - strand, within EX28DRAFT_3192 at 492.782 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.821 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 490,235 + EX28DRAFT_3189 0.63 -0.1 490,349 + EX28DRAFT_3189 0.76 +0.2 490,582 + +0.2 490,582 + -0.8 490,589 + -0.2 490,845 - EX28DRAFT_3190 0.61 +1.9 490,897 + EX28DRAFT_3190 0.73 -0.1 490,897 + EX28DRAFT_3190 0.73 -1.1 490,897 + EX28DRAFT_3190 0.73 +0.3 490,897 + EX28DRAFT_3190 0.73 -1.5 491,074 - -0.1 491,074 - +1.1 491,159 + EX28DRAFT_3191 0.13 +2.6 491,159 + EX28DRAFT_3191 0.13 +1.7 491,160 - EX28DRAFT_3191 0.13 -0.2 491,243 - EX28DRAFT_3191 0.21 +0.3 491,390 + EX28DRAFT_3191 0.34 +0.9 491,390 + EX28DRAFT_3191 0.34 -0.4 491,467 - EX28DRAFT_3191 0.40 +0.8 491,467 - EX28DRAFT_3191 0.40 +0.2 491,549 - EX28DRAFT_3191 0.48 -2.5 491,549 - EX28DRAFT_3191 0.48 -1.5 491,549 - EX28DRAFT_3191 0.48 -0.3 491,562 + EX28DRAFT_3191 0.49 -0.2 491,648 + EX28DRAFT_3191 0.56 -0.4 491,772 + EX28DRAFT_3191 0.67 +0.2 491,773 - EX28DRAFT_3191 0.67 -0.1 491,833 + EX28DRAFT_3191 0.73 +0.3 491,850 - EX28DRAFT_3191 0.74 +0.1 491,851 + EX28DRAFT_3191 0.74 +0.7 491,852 - EX28DRAFT_3191 0.74 +0.2 491,953 + EX28DRAFT_3191 0.83 +0.3 491,954 - EX28DRAFT_3191 0.83 +0.1 491,954 - EX28DRAFT_3191 0.83 -0.1 492,096 + -0.5 492,097 - +0.7 492,388 + -0.8 492,675 - EX28DRAFT_3192 0.25 -1.1 492,782 + EX28DRAFT_3192 0.34 +0.5 492,796 + EX28DRAFT_3192 0.35 +0.2 492,796 + EX28DRAFT_3192 0.35 +0.6 492,821 + EX28DRAFT_3192 0.38 -1.5 493,067 + EX28DRAFT_3192 0.59 -2.6 493,067 + EX28DRAFT_3192 0.59 +0.4
Or see this region's nucleotide sequence