Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3149 and EX28DRAFT_3150 are separated by 215 nucleotides EX28DRAFT_3150 and EX28DRAFT_3151 are separated by 34 nucleotides
EX28DRAFT_3149: EX28DRAFT_3149 - ABC-type sugar transport system, ATPase component, at 449,026 to 450,513
_3149
EX28DRAFT_3150: EX28DRAFT_3150 - Transcriptional regulator, contains sigma factor-related N-terminal domain, at 450,729 to 451,697
_3150
EX28DRAFT_3151: EX28DRAFT_3151 - Sugar (pentulose and hexulose) kinases, at 451,732 to 453,327
_3151
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 450.033 kb on + strand, within EX28DRAFT_3149 at 450.269 kb on + strand, within EX28DRAFT_3149 at 450.270 kb on - strand, within EX28DRAFT_3149 at 450.311 kb on + strand, within EX28DRAFT_3149 at 450.311 kb on + strand, within EX28DRAFT_3149 at 450.550 kb on - strand at 450.550 kb on - strand at 450.580 kb on - strand at 450.581 kb on + strand at 450.581 kb on + strand at 450.581 kb on + strand at 450.582 kb on - strand at 450.611 kb on - strand at 450.699 kb on + strand at 450.699 kb on + strand at 450.728 kb on + strand at 450.820 kb on - strand at 450.974 kb on - strand, within EX28DRAFT_3150 at 451.022 kb on + strand, within EX28DRAFT_3150 at 451.207 kb on - strand, within EX28DRAFT_3150 at 451.209 kb on - strand, within EX28DRAFT_3150 at 451.301 kb on - strand, within EX28DRAFT_3150 at 451.417 kb on - strand, within EX28DRAFT_3150 at 451.419 kb on - strand, within EX28DRAFT_3150 at 451.419 kb on - strand, within EX28DRAFT_3150 at 451.444 kb on - strand, within EX28DRAFT_3150 at 451.696 kb on - strand at 451.745 kb on + strand at 451.746 kb on - strand at 451.751 kb on + strand at 451.997 kb on - strand, within EX28DRAFT_3151 at 451.997 kb on - strand, within EX28DRAFT_3151 at 452.107 kb on + strand, within EX28DRAFT_3151 at 452.186 kb on - strand, within EX28DRAFT_3151 at 452.350 kb on - strand, within EX28DRAFT_3151
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 450,033 + EX28DRAFT_3149 0.68 +0.3 450,269 + EX28DRAFT_3149 0.84 +0.1 450,270 - EX28DRAFT_3149 0.84 -0.0 450,311 + EX28DRAFT_3149 0.86 -3.0 450,311 + EX28DRAFT_3149 0.86 +0.8 450,550 - +0.0 450,550 - +0.4 450,580 - -0.4 450,581 + +0.5 450,581 + +0.0 450,581 + -0.5 450,582 - +0.4 450,611 - -0.1 450,699 + +0.9 450,699 + -2.2 450,728 + -0.5 450,820 - -0.4 450,974 - EX28DRAFT_3150 0.25 -0.4 451,022 + EX28DRAFT_3150 0.30 +0.0 451,207 - EX28DRAFT_3150 0.49 -0.5 451,209 - EX28DRAFT_3150 0.50 +2.0 451,301 - EX28DRAFT_3150 0.59 +1.0 451,417 - EX28DRAFT_3150 0.71 -1.3 451,419 - EX28DRAFT_3150 0.71 +0.7 451,419 - EX28DRAFT_3150 0.71 -0.9 451,444 - EX28DRAFT_3150 0.74 -1.2 451,696 - -0.1 451,745 + +0.6 451,746 - +0.0 451,751 + -0.3 451,997 - EX28DRAFT_3151 0.17 +0.4 451,997 - EX28DRAFT_3151 0.17 -3.0 452,107 + EX28DRAFT_3151 0.23 -1.4 452,186 - EX28DRAFT_3151 0.28 +1.0 452,350 - EX28DRAFT_3151 0.39 -0.6
Or see this region's nucleotide sequence