Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3142

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3140 and EX28DRAFT_3141 are separated by 38 nucleotidesEX28DRAFT_3141 and EX28DRAFT_3142 are separated by 42 nucleotidesEX28DRAFT_3142 and EX28DRAFT_3143 are separated by 12 nucleotidesEX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotides EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541 _3140 EX28DRAFT_3141: EX28DRAFT_3141 - transcriptional regulator, XRE family with cupin sensor, at 442,580 to 443,182 _3141 EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911 _3142 EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772 _3143 EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121 _3144 Position (kb) 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 442.279 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.522 kb on + strandat 442.522 kb on + strandat 442.523 kb on - strandat 442.610 kb on - strandat 442.722 kb on - strand, within EX28DRAFT_3141at 442.814 kb on + strand, within EX28DRAFT_3141at 442.815 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.224 kb on + strandat 443.224 kb on + strandat 443.224 kb on + strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.530 kb on + strand, within EX28DRAFT_3142at 443.530 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.641 kb on + strand, within EX28DRAFT_3142at 443.693 kb on - strand, within EX28DRAFT_3142at 443.779 kb on + strand, within EX28DRAFT_3142at 443.779 kb on + strand, within EX28DRAFT_3142at 443.780 kb on - strand, within EX28DRAFT_3142at 443.789 kb on - strand, within EX28DRAFT_3142at 443.909 kb on + strandat 443.909 kb on + strandat 444.062 kb on + strand, within EX28DRAFT_3143at 444.063 kb on - strand, within EX28DRAFT_3143at 444.068 kb on + strand, within EX28DRAFT_3143at 444.315 kb on - strand, within EX28DRAFT_3143at 444.315 kb on - strand, within EX28DRAFT_3143at 444.360 kb on + strand, within EX28DRAFT_3143at 444.385 kb on + strand, within EX28DRAFT_3143at 444.385 kb on + strand, within EX28DRAFT_3143at 444.387 kb on + strand, within EX28DRAFT_3143at 444.388 kb on - strand, within EX28DRAFT_3143at 444.630 kb on - strand, within EX28DRAFT_3143at 444.635 kb on - strand, within EX28DRAFT_3143at 444.743 kb on - strandat 444.817 kb on + strandat 444.818 kb on - strandat 444.818 kb on - strandat 444.818 kb on - strandat 444.819 kb on + strandat 444.863 kb on + strand, within EX28DRAFT_3144at 444.863 kb on + strand, within EX28DRAFT_3144at 444.863 kb on + strand, within EX28DRAFT_3144at 444.864 kb on - strand, within EX28DRAFT_3144at 444.910 kb on + strand, within EX28DRAFT_3144at 444.911 kb on - strand, within EX28DRAFT_3144

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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442,279 + EX28DRAFT_3140 0.81 -0.7
442,367 + EX28DRAFT_3140 0.88 -1.0
442,367 + EX28DRAFT_3140 0.88 -0.0
442,522 + +0.6
442,522 + +0.1
442,523 - -3.2
442,610 - -0.8
442,722 - EX28DRAFT_3141 0.24 +0.3
442,814 + EX28DRAFT_3141 0.39 -0.6
442,815 - EX28DRAFT_3141 0.39 +0.0
443,042 - EX28DRAFT_3141 0.77 -0.1
443,042 - EX28DRAFT_3141 0.77 -1.1
443,224 + -1.0
443,224 + -3.7
443,224 + +0.5
443,225 - +0.0
443,225 - -0.4
443,225 - +0.2
443,247 + -1.6
443,247 + +0.5
443,247 + -2.8
443,530 + EX28DRAFT_3142 0.44 -0.4
443,530 + EX28DRAFT_3142 0.44 -0.3
443,534 + EX28DRAFT_3142 0.45 -0.6
443,534 + EX28DRAFT_3142 0.45 -0.1
443,534 + EX28DRAFT_3142 0.45 -0.9
443,534 + EX28DRAFT_3142 0.45 +0.3
443,534 + EX28DRAFT_3142 0.45 -1.3
443,534 + EX28DRAFT_3142 0.45 -1.6
443,534 + EX28DRAFT_3142 0.45 -0.3
443,534 + EX28DRAFT_3142 0.45 +0.7
443,535 - EX28DRAFT_3142 0.45 -0.1
443,535 - EX28DRAFT_3142 0.45 -1.5
443,535 - EX28DRAFT_3142 0.45 -0.4
443,535 - EX28DRAFT_3142 0.45 +0.2
443,535 - EX28DRAFT_3142 0.45 -0.8
443,641 + EX28DRAFT_3142 0.61 +0.1
443,693 - EX28DRAFT_3142 0.68 +0.6
443,779 + EX28DRAFT_3142 0.81 -0.2
443,779 + EX28DRAFT_3142 0.81 +1.0
443,780 - EX28DRAFT_3142 0.81 +1.1
443,789 - EX28DRAFT_3142 0.82 +0.8
443,909 + -0.7
443,909 + -1.6
444,062 + EX28DRAFT_3143 0.16 -2.8
444,063 - EX28DRAFT_3143 0.16 +0.2
444,068 + EX28DRAFT_3143 0.17 +1.0
444,315 - EX28DRAFT_3143 0.46 -1.0
444,315 - EX28DRAFT_3143 0.46 -0.8
444,360 + EX28DRAFT_3143 0.51 +1.4
444,385 + EX28DRAFT_3143 0.54 -0.1
444,385 + EX28DRAFT_3143 0.54 -1.6
444,387 + EX28DRAFT_3143 0.55 -2.0
444,388 - EX28DRAFT_3143 0.55 +0.1
444,630 - EX28DRAFT_3143 0.83 -0.0
444,635 - EX28DRAFT_3143 0.84 +1.3
444,743 - +0.5
444,817 + +0.2
444,818 - +0.0
444,818 - +0.7
444,818 - -0.1
444,819 + +0.1
444,863 + EX28DRAFT_3144 0.12 -0.6
444,863 + EX28DRAFT_3144 0.12 -0.2
444,863 + EX28DRAFT_3144 0.12 -1.1
444,864 - EX28DRAFT_3144 0.12 -3.8
444,910 + EX28DRAFT_3144 0.28 -0.7
444,911 - EX28DRAFT_3144 0.28 -1.5

Or see this region's nucleotide sequence